miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23660 3' -60.6 NC_005261.1 + 29405 0.66 0.683464
Target:  5'- cGGCCgCgcgcuacgCGGCGGCCgcGGGGccCGCGg -3'
miRNA:   3'- -CCGG-Ga-------GCCGCUGGaaCUCCacGCGC- -5'
23660 3' -60.6 NC_005261.1 + 5563 0.66 0.683464
Target:  5'- cGCCCgagCGGCGGagaUGGGG-GCGCc -3'
miRNA:   3'- cCGGGa--GCCGCUggaACUCCaCGCGc -5'
23660 3' -60.6 NC_005261.1 + 74809 0.66 0.680516
Target:  5'- aGGCCCgcguggcggaggUGGCcgccgugcucgcgGACCUgggGAGGcgGCGCGc -3'
miRNA:   3'- -CCGGGa-----------GCCG-------------CUGGAa--CUCCa-CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 90124 0.66 0.673625
Target:  5'- cGGCCCgCGGCGAgggCgagGAGGgGgGCGa -3'
miRNA:   3'- -CCGGGaGCCGCUg--Gaa-CUCCaCgCGC- -5'
23660 3' -60.6 NC_005261.1 + 81974 0.66 0.673625
Target:  5'- cGGUgUUCGGCGGCUgcgcgaaGuuGUGCGCGc -3'
miRNA:   3'- -CCGgGAGCCGCUGGaa-----CucCACGCGC- -5'
23660 3' -60.6 NC_005261.1 + 98288 0.66 0.673625
Target:  5'- cGCCCggcgCGuccGCGGCCUcGGGGgcggGCGCc -3'
miRNA:   3'- cCGGGa---GC---CGCUGGAaCUCCa---CGCGc -5'
23660 3' -60.6 NC_005261.1 + 94386 0.67 0.663755
Target:  5'- uGGCCagcgcggCGGCGGCCUccucgacgaAGG-GCGCGa -3'
miRNA:   3'- -CCGGga-----GCCGCUGGAac-------UCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 132601 0.67 0.663755
Target:  5'- cGCCCggccCGGCGAgCCgccaGGGG-GCGCu -3'
miRNA:   3'- cCGGGa---GCCGCU-GGaa--CUCCaCGCGc -5'
23660 3' -60.6 NC_005261.1 + 110214 0.67 0.663755
Target:  5'- uGGCgcaaCCUCGGCGacGCCUccagcgUGGGcG-GCGCGg -3'
miRNA:   3'- -CCG----GGAGCCGC--UGGA------ACUC-CaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 90222 0.67 0.663755
Target:  5'- cGCCCUCGcGCGGCg--GGcGG-GCGCGc -3'
miRNA:   3'- cCGGGAGC-CGCUGgaaCU-CCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 12504 0.67 0.663755
Target:  5'- uGGCCCcccgGGCGACCgcgcGGGGccccGCGCc -3'
miRNA:   3'- -CCGGGag--CCGCUGGaa--CUCCa---CGCGc -5'
23660 3' -60.6 NC_005261.1 + 62861 0.67 0.653862
Target:  5'- cGCCacgCGGCGGCCUUuua-UGCGCGg -3'
miRNA:   3'- cCGGga-GCCGCUGGAAcuccACGCGC- -5'
23660 3' -60.6 NC_005261.1 + 101113 0.67 0.653862
Target:  5'- cGCgCCUUGGCGcCCUcGuGGUccucGCGCGa -3'
miRNA:   3'- cCG-GGAGCCGCuGGAaCuCCA----CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 115850 0.67 0.653862
Target:  5'- uGGCCCgcgCGGCccCCgccGAGGcGCGCc -3'
miRNA:   3'- -CCGGGa--GCCGcuGGaa-CUCCaCGCGc -5'
23660 3' -60.6 NC_005261.1 + 98373 0.67 0.653862
Target:  5'- gGGCUCU-GGCGggcgcaauACCggcgUGGGGgcggGCGCGg -3'
miRNA:   3'- -CCGGGAgCCGC--------UGGa---ACUCCa---CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 119983 0.67 0.643951
Target:  5'- aGCCC-CGGcCGACgCUgGAGG-GCGCc -3'
miRNA:   3'- cCGGGaGCC-GCUG-GAaCUCCaCGCGc -5'
23660 3' -60.6 NC_005261.1 + 50989 0.67 0.643951
Target:  5'- cGGCCgaCGGCGGCgCgu--GG-GCGCGg -3'
miRNA:   3'- -CCGGgaGCCGCUG-GaacuCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 34733 0.67 0.643951
Target:  5'- cGCCCccUGGCGGCCgcGGGGUG-GUGu -3'
miRNA:   3'- cCGGGa-GCCGCUGGaaCUCCACgCGC- -5'
23660 3' -60.6 NC_005261.1 + 98144 0.67 0.643951
Target:  5'- cGGCCgUCGGCGGCaagGccgcgggcggcGGGUGUGUc -3'
miRNA:   3'- -CCGGgAGCCGCUGgaaC-----------UCCACGCGc -5'
23660 3' -60.6 NC_005261.1 + 41538 0.67 0.643951
Target:  5'- aGCCC-CGGCuGGCCcgUGGcGGUGCGg- -3'
miRNA:   3'- cCGGGaGCCG-CUGGa-ACU-CCACGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.