miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23661 3' -58.2 NC_005261.1 + 80883 0.66 0.832026
Target:  5'- cGCGCGGGCuucagcggcgccUCCCagggguccucgucgcGGUcGAAggccacCACCUUGCg -3'
miRNA:   3'- -CGCGUCCG------------AGGG---------------CCA-CUU------GUGGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 87631 0.66 0.828726
Target:  5'- gGCGCGaacgccGcCUCCaCGGUGAGC-CCgCGCa -3'
miRNA:   3'- -CGCGUc-----C-GAGG-GCCACUUGuGGaGCG- -5'
23661 3' -58.2 NC_005261.1 + 4094 0.66 0.828726
Target:  5'- gGCGCcgucacGCUCCCGGUGAugAacgaGCu -3'
miRNA:   3'- -CGCGuc----CGAGGGCCACUugUggagCG- -5'
23661 3' -58.2 NC_005261.1 + 3905 0.66 0.828726
Target:  5'- gGCGCGGGCgCCCGcgc--CGCCggCGCc -3'
miRNA:   3'- -CGCGUCCGaGGGCcacuuGUGGa-GCG- -5'
23661 3' -58.2 NC_005261.1 + 60209 0.66 0.828726
Target:  5'- cGCGCGcGCUCCCGccgcgGGGCGCCcccagggcCGCc -3'
miRNA:   3'- -CGCGUcCGAGGGCca---CUUGUGGa-------GCG- -5'
23661 3' -58.2 NC_005261.1 + 133788 0.66 0.828726
Target:  5'- cGUGCGGcGCaUCCCGcccGGGCugCUCGa -3'
miRNA:   3'- -CGCGUC-CG-AGGGCca-CUUGugGAGCg -5'
23661 3' -58.2 NC_005261.1 + 109005 0.66 0.828726
Target:  5'- cGCGCugcGcGUUCaCCGGgccGAACGCCgccguggCGCg -3'
miRNA:   3'- -CGCGu--C-CGAG-GGCCa--CUUGUGGa------GCG- -5'
23661 3' -58.2 NC_005261.1 + 91732 0.66 0.828726
Target:  5'- cGCgGCGGGCUUCgCGGcGcucACGCCggcggCGCa -3'
miRNA:   3'- -CG-CGUCCGAGG-GCCaCu--UGUGGa----GCG- -5'
23661 3' -58.2 NC_005261.1 + 58873 0.66 0.828726
Target:  5'- aGCGCugGGGaggUCCGG-GcGgGCCUCGCa -3'
miRNA:   3'- -CGCG--UCCga-GGGCCaCuUgUGGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 83022 0.66 0.828726
Target:  5'- uCGCcGGCgccCCCGG-GAGgGCCgcUCGCc -3'
miRNA:   3'- cGCGuCCGa--GGGCCaCUUgUGG--AGCG- -5'
23661 3' -58.2 NC_005261.1 + 106132 0.66 0.828726
Target:  5'- cGCGCcGGCaacgCCggacaUGGUGc-CGCCUCGCc -3'
miRNA:   3'- -CGCGuCCGa---GG-----GCCACuuGUGGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 63022 0.66 0.828726
Target:  5'- cGCGCGGGCg-CCGG----CGCC-CGCg -3'
miRNA:   3'- -CGCGUCCGagGGCCacuuGUGGaGCG- -5'
23661 3' -58.2 NC_005261.1 + 41652 0.66 0.827896
Target:  5'- uGCGCGuggaggcGGCUCauguaGGcGcuCACCUCGCg -3'
miRNA:   3'- -CGCGU-------CCGAGgg---CCaCuuGUGGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 61411 0.66 0.820354
Target:  5'- cGUGguGGC-CUCGcaGGACcugGCCUCGCu -3'
miRNA:   3'- -CGCguCCGaGGGCcaCUUG---UGGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 30006 0.66 0.820354
Target:  5'- gGCGCGucuGaGCUCCCGGUGcucucGGCugCa-GCg -3'
miRNA:   3'- -CGCGU---C-CGAGGGCCAC-----UUGugGagCG- -5'
23661 3' -58.2 NC_005261.1 + 45662 0.66 0.812677
Target:  5'- -aGCGGGCgugaucaacgcgcgcCCCGGgcugcUGAACGggccCCUCGCc -3'
miRNA:   3'- cgCGUCCGa--------------GGGCC-----ACUUGU----GGAGCG- -5'
23661 3' -58.2 NC_005261.1 + 37209 0.66 0.811816
Target:  5'- gGCGCuacuguGGCUCCCGcGggcuuGCGCggCGCg -3'
miRNA:   3'- -CGCGu-----CCGAGGGC-Cacu--UGUGgaGCG- -5'
23661 3' -58.2 NC_005261.1 + 50201 0.66 0.811816
Target:  5'- uGCaGCAGcGCgucgaCCCGGUGcaAGCGCCccaUCGUc -3'
miRNA:   3'- -CG-CGUC-CGa----GGGCCAC--UUGUGG---AGCG- -5'
23661 3' -58.2 NC_005261.1 + 47263 0.66 0.811816
Target:  5'- uGCGCcGGCcCgCCGGcgaaGAGCGCCgCGUg -3'
miRNA:   3'- -CGCGuCCGaG-GGCCa---CUUGUGGaGCG- -5'
23661 3' -58.2 NC_005261.1 + 33269 0.66 0.811816
Target:  5'- uCGC-GGCccccguccccgUCCCGGUccguGGGCACCccgUCGCg -3'
miRNA:   3'- cGCGuCCG-----------AGGGCCA----CUUGUGG---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.