miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23661 5' -51 NC_005261.1 + 57727 0.66 0.983615
Target:  5'- gAGGUaGAGGcgccgGUCCGCGUAGGaCCa- -3'
miRNA:   3'- -UUCGaUUCCaa---CAGGUGCAUUC-GGag -5'
23661 5' -51 NC_005261.1 + 105418 0.66 0.981526
Target:  5'- aGGGCUc--GUcGUCCAgGUAGGUCUCg -3'
miRNA:   3'- -UUCGAuucCAaCAGGUgCAUUCGGAG- -5'
23661 5' -51 NC_005261.1 + 70651 0.66 0.979244
Target:  5'- -cGCUGAGGUUcGgcgCCGCGgccgcGGGCCg- -3'
miRNA:   3'- uuCGAUUCCAA-Ca--GGUGCa----UUCGGag -5'
23661 5' -51 NC_005261.1 + 30815 0.67 0.974062
Target:  5'- gGAGCUGGGGggGcCCGgGgacgGGGCCg- -3'
miRNA:   3'- -UUCGAUUCCaaCaGGUgCa---UUCGGag -5'
23661 5' -51 NC_005261.1 + 124812 0.67 0.964617
Target:  5'- -cGCUcuAGGUg---CGCGUAGGCCUCa -3'
miRNA:   3'- uuCGAu-UCCAacagGUGCAUUCGGAG- -5'
23661 5' -51 NC_005261.1 + 79862 0.68 0.957119
Target:  5'- -cGCUGGGGUUGagCUugGcc-GCCUCg -3'
miRNA:   3'- uuCGAUUCCAACa-GGugCauuCGGAG- -5'
23661 5' -51 NC_005261.1 + 121653 0.68 0.939036
Target:  5'- cGAGCgcGGGcUGUCCGCGUcGGCgUa -3'
miRNA:   3'- -UUCGauUCCaACAGGUGCAuUCGgAg -5'
23661 5' -51 NC_005261.1 + 16187 0.7 0.882682
Target:  5'- uGGCgGGGGUgggcgGgggCCGCGUGauGGCCUCg -3'
miRNA:   3'- uUCGaUUCCAa----Ca--GGUGCAU--UCGGAG- -5'
23661 5' -51 NC_005261.1 + 25174 0.71 0.850947
Target:  5'- cGAGC--GGGUUGgaUCACGUGGGCCUg -3'
miRNA:   3'- -UUCGauUCCAACa-GGUGCAUUCGGAg -5'
23661 5' -51 NC_005261.1 + 72289 0.72 0.815626
Target:  5'- cGGCUGAGGUUcgCgACGUGGGCCa- -3'
miRNA:   3'- uUCGAUUCCAAcaGgUGCAUUCGGag -5'
23661 5' -51 NC_005261.1 + 58875 0.75 0.640094
Target:  5'- -cGCUGGGGagGUCCGgGcGGGCCUCg -3'
miRNA:   3'- uuCGAUUCCaaCAGGUgCaUUCGGAG- -5'
23661 5' -51 NC_005261.1 + 40827 1.09 0.006245
Target:  5'- gAAGCUAAGGUUGUCCACGUAAGCCUCg -3'
miRNA:   3'- -UUCGAUUCCAACAGGUGCAUUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.