miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23662 3' -60.5 NC_005261.1 + 105284 0.66 0.723278
Target:  5'- cAGCGcCgGCGAGCccgGGCgcgCgaGCGCGGg -3'
miRNA:   3'- cUCGCaGgCGCUCG---UCGa--Gg-UGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 97701 0.66 0.723278
Target:  5'- gGGGCGguggggagaCgGCGGGUGGC-CCGgGCGGg -3'
miRNA:   3'- -CUCGCa--------GgCGCUCGUCGaGGUgCGCC- -5'
23662 3' -60.5 NC_005261.1 + 37193 0.66 0.723278
Target:  5'- uGGCGgcgCUGCuGGCggcgcuacuguGGCUCC-CGCGGg -3'
miRNA:   3'- cUCGCa--GGCGcUCG-----------UCGAGGuGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 56123 0.66 0.723278
Target:  5'- gGAGCGcgCCGCaGGGCGGggg-GCGCGGg -3'
miRNA:   3'- -CUCGCa-GGCG-CUCGUCgaggUGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 93515 0.66 0.723278
Target:  5'- cGGCGccguguuggCCGCGAGgaAGC-CCGCGCGc -3'
miRNA:   3'- cUCGCa--------GGCGCUCg-UCGaGGUGCGCc -5'
23662 3' -60.5 NC_005261.1 + 68275 0.66 0.723278
Target:  5'- -uGCGcCCGCGcGGCGGggCCccggccgcggGCGCGGa -3'
miRNA:   3'- cuCGCaGGCGC-UCGUCgaGG----------UGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 35920 0.66 0.723278
Target:  5'- -cGCGgccCCGCGccGCAGC-CCA-GCGGg -3'
miRNA:   3'- cuCGCa--GGCGCu-CGUCGaGGUgCGCC- -5'
23662 3' -60.5 NC_005261.1 + 74886 0.66 0.723278
Target:  5'- cGGCGgCgGCGgagucGGCGGCccgcgcuggCCGCGCGGg -3'
miRNA:   3'- cUCGCaGgCGC-----UCGUCGa--------GGUGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 127804 0.66 0.723278
Target:  5'- cGGCG-CCGCG-GCGGCgggCCGCucGCGc -3'
miRNA:   3'- cUCGCaGGCGCuCGUCGa--GGUG--CGCc -5'
23662 3' -60.5 NC_005261.1 + 32514 0.66 0.720388
Target:  5'- gGGGgGUCCGCGccgcgcccggccccGGCcccGGCcgCgGCGCGGg -3'
miRNA:   3'- -CUCgCAGGCGC--------------UCG---UCGa-GgUGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 1357 0.66 0.713622
Target:  5'- cAGCGUcucCCGCGGGCccuGgUCCGCGUc- -3'
miRNA:   3'- cUCGCA---GGCGCUCGu--CgAGGUGCGcc -5'
23662 3' -60.5 NC_005261.1 + 135664 0.66 0.713622
Target:  5'- cGGGCGgcccUCGCucGAGgAGCUcugcgCCGCGCGGc -3'
miRNA:   3'- -CUCGCa---GGCG--CUCgUCGA-----GGUGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 47005 0.66 0.713622
Target:  5'- -cGCGccgCCGCGAuGCGGCgguccagccCCGCGaCGGc -3'
miRNA:   3'- cuCGCa--GGCGCU-CGUCGa--------GGUGC-GCC- -5'
23662 3' -60.5 NC_005261.1 + 43793 0.66 0.713622
Target:  5'- aGGGCG-CCGCGGGUgagggGGCgCCGgGCGc -3'
miRNA:   3'- -CUCGCaGGCGCUCG-----UCGaGGUgCGCc -5'
23662 3' -60.5 NC_005261.1 + 28455 0.66 0.713622
Target:  5'- uGGCGUCUcccgGCGGGCacgAGCcggCCACGCu- -3'
miRNA:   3'- cUCGCAGG----CGCUCG---UCGa--GGUGCGcc -5'
23662 3' -60.5 NC_005261.1 + 30146 0.66 0.713622
Target:  5'- gGAGCG-CgCGCGccuuAGCGGCgCCGCGCc- -3'
miRNA:   3'- -CUCGCaG-GCGC----UCGUCGaGGUGCGcc -5'
23662 3' -60.5 NC_005261.1 + 29686 0.66 0.713622
Target:  5'- uGGGCGcugCCGCacguGGCGGC-CUGCGUGGc -3'
miRNA:   3'- -CUCGCa--GGCGc---UCGUCGaGGUGCGCC- -5'
23662 3' -60.5 NC_005261.1 + 80554 0.66 0.713622
Target:  5'- uGGGUGcgcagaaaguUCCGCGAGacaGGCUCCuugagGCGcCGGc -3'
miRNA:   3'- -CUCGC----------AGGCGCUCg--UCGAGG-----UGC-GCC- -5'
23662 3' -60.5 NC_005261.1 + 102577 0.66 0.713622
Target:  5'- -cGcCGUCCGCGucGGCGGCcucgcCCGCGCc- -3'
miRNA:   3'- cuC-GCAGGCGC--UCGUCGa----GGUGCGcc -5'
23662 3' -60.5 NC_005261.1 + 94644 0.66 0.713622
Target:  5'- cGGCG-CgCGCGAacauGCGGCUCCGCGa-- -3'
miRNA:   3'- cUCGCaG-GCGCU----CGUCGAGGUGCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.