miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23662 5' -53.9 NC_005261.1 + 59684 0.66 0.959438
Target:  5'- aAGCCGCccucGgcCaGCACgCGCUCCg -3'
miRNA:   3'- -UCGGCGcuuuCauGaUGUGgGCGAGG- -5'
23662 5' -53.9 NC_005261.1 + 58668 0.66 0.959438
Target:  5'- cAGgCGCGguGGUACggcaggAgGCCCGggCCg -3'
miRNA:   3'- -UCgGCGCuuUCAUGa-----UgUGGGCgaGG- -5'
23662 5' -53.9 NC_005261.1 + 16885 0.66 0.959438
Target:  5'- uAGUacaGCGGccGgGC-GCACCCGCUCUc -3'
miRNA:   3'- -UCGg--CGCUuuCaUGaUGUGGGCGAGG- -5'
23662 5' -53.9 NC_005261.1 + 107367 0.66 0.959438
Target:  5'- cGUCGUGGGcgccGGg---GCGCCCGCgUCCa -3'
miRNA:   3'- uCGGCGCUU----UCaugaUGUGGGCG-AGG- -5'
23662 5' -53.9 NC_005261.1 + 42926 0.66 0.959438
Target:  5'- cGCCggGCGAGugGGUGCggaucCACCCGacgCCg -3'
miRNA:   3'- uCGG--CGCUU--UCAUGau---GUGGGCga-GG- -5'
23662 5' -53.9 NC_005261.1 + 106551 0.66 0.959438
Target:  5'- cGGCCGCGuccGGgccgGCgcGCGCCgGCcCCg -3'
miRNA:   3'- -UCGGCGCuu-UCa---UGa-UGUGGgCGaGG- -5'
23662 5' -53.9 NC_005261.1 + 53110 0.66 0.959438
Target:  5'- cGCCGCGGc---GCUGCGCgCCGC-Ca -3'
miRNA:   3'- uCGGCGCUuucaUGAUGUG-GGCGaGg -5'
23662 5' -53.9 NC_005261.1 + 91435 0.66 0.959068
Target:  5'- cGCCGCGGugaacgcGCUGCgcggcacggccccGCCCGCgCCu -3'
miRNA:   3'- uCGGCGCUuuca---UGAUG-------------UGGGCGaGG- -5'
23662 5' -53.9 NC_005261.1 + 120462 0.66 0.958697
Target:  5'- -uCCGCGAuAGacgggcccgucgACUACACCUGCacugCCa -3'
miRNA:   3'- ucGGCGCUuUCa-----------UGAUGUGGGCGa---GG- -5'
23662 5' -53.9 NC_005261.1 + 14361 0.66 0.95564
Target:  5'- cAGCCGCGGccGGGgcgGCgcggugGCCCGCaucgCCa -3'
miRNA:   3'- -UCGGCGCU--UUCa--UGaug---UGGGCGa---GG- -5'
23662 5' -53.9 NC_005261.1 + 60266 0.66 0.95564
Target:  5'- cGGCCGUGAAGag---GCGCCCGgggUCCg -3'
miRNA:   3'- -UCGGCGCUUUcaugaUGUGGGCg--AGG- -5'
23662 5' -53.9 NC_005261.1 + 97116 0.66 0.95564
Target:  5'- gGGCCGCGGccggAGGcGCcGCGgCCaCGCUCg -3'
miRNA:   3'- -UCGGCGCU----UUCaUGaUGU-GG-GCGAGg -5'
23662 5' -53.9 NC_005261.1 + 59143 0.66 0.95564
Target:  5'- aGGCCgGCGcgccccGGGcGCgcgGCGCCCGCcCCa -3'
miRNA:   3'- -UCGG-CGCu-----UUCaUGa--UGUGGGCGaGG- -5'
23662 5' -53.9 NC_005261.1 + 72265 0.66 0.95564
Target:  5'- -aCCGCGAu-GUACU-CGCCCaGCagCCg -3'
miRNA:   3'- ucGGCGCUuuCAUGAuGUGGG-CGa-GG- -5'
23662 5' -53.9 NC_005261.1 + 73794 0.66 0.95564
Target:  5'- uGCgCGCGgcGGUcggcgcgcagaaGCcGCGCCCGCgCCu -3'
miRNA:   3'- uCG-GCGCuuUCA------------UGaUGUGGGCGaGG- -5'
23662 5' -53.9 NC_005261.1 + 108497 0.66 0.95564
Target:  5'- cGCCGCGAc---GCU--ACCCGCggCCa -3'
miRNA:   3'- uCGGCGCUuucaUGAugUGGGCGa-GG- -5'
23662 5' -53.9 NC_005261.1 + 50347 0.66 0.95564
Target:  5'- cAGCCGCc--GGUagGCcGCGCCCgucaucacguaGCUCCg -3'
miRNA:   3'- -UCGGCGcuuUCA--UGaUGUGGG-----------CGAGG- -5'
23662 5' -53.9 NC_005261.1 + 23470 0.66 0.95564
Target:  5'- aGGcCCGCGGcggcGAGUGCgcGgGCCCGC-CUg -3'
miRNA:   3'- -UC-GGCGCU----UUCAUGa-UgUGGGCGaGG- -5'
23662 5' -53.9 NC_005261.1 + 29405 0.66 0.954455
Target:  5'- cGGCCGCGc----GCUACgcggcggccgcgggGCCCGCggCCg -3'
miRNA:   3'- -UCGGCGCuuucaUGAUG--------------UGGGCGa-GG- -5'
23662 5' -53.9 NC_005261.1 + 51235 0.66 0.953249
Target:  5'- uAGCCgccuggacgcuccagGCGGccGUGCUGCugCUGUcCCa -3'
miRNA:   3'- -UCGG---------------CGCUuuCAUGAUGugGGCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.