miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 58304 0.66 0.560556
Target:  5'- gGGCgcggggaggGGGCGGC-CCAGCcgcccgagcaccgccUCGCGGAg -3'
miRNA:   3'- -UCGag-------CCCGCCGcGGUCG---------------AGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 32423 0.66 0.558616
Target:  5'- cGGCgaCGGGagccccgccggccugGGCGCCGGCacagucacccccgggCACGGACu -3'
miRNA:   3'- -UCGa-GCCCg--------------CCGCGGUCGa--------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118724 0.66 0.556678
Target:  5'- cGCgggCGGGCacGGCGUCGcGCUCGCcGAg -3'
miRNA:   3'- uCGa--GCCCG--CCGCGGU-CGAGUGcCUg -5'
23663 3' -63.4 NC_005261.1 + 73674 0.66 0.556678
Target:  5'- cGCggaGGGCgGGCGCgGGCUUagACGG-Cu -3'
miRNA:   3'- uCGag-CCCG-CCGCGgUCGAG--UGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 118634 0.66 0.556678
Target:  5'- cGC-CGcGGCGGCGCUcugGGCcC-CGGGCc -3'
miRNA:   3'- uCGaGC-CCGCCGCGG---UCGaGuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 103372 0.66 0.556678
Target:  5'- cAGCUCGGcCGcGCGCCGccgcGC-CGCGGcCg -3'
miRNA:   3'- -UCGAGCCcGC-CGCGGU----CGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 42610 0.66 0.556678
Target:  5'- cAGCUCGcGCGGCGCaaAGUccagCGgGGACu -3'
miRNA:   3'- -UCGAGCcCGCCGCGg-UCGa---GUgCCUG- -5'
23663 3' -63.4 NC_005261.1 + 51220 0.66 0.556678
Target:  5'- uGCUgcUGGGC-GCGCUAGC-CGCcuGGACg -3'
miRNA:   3'- uCGA--GCCCGcCGCGGUCGaGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 21619 0.66 0.556678
Target:  5'- gAGCuUCGGGCGaGgGUCcccGCcccggCGCGGACg -3'
miRNA:   3'- -UCG-AGCCCGC-CgCGGu--CGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 56391 0.66 0.556678
Target:  5'- gAGCUCgcggGGGCccugGGCGCCcugcGCUuCGCGGcGCa -3'
miRNA:   3'- -UCGAG----CCCG----CCGCGGu---CGA-GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 3425 0.66 0.556678
Target:  5'- gAGCgcgCGGGCcaGCGuCCAgGCgggcgCGCGGGCc -3'
miRNA:   3'- -UCGa--GCCCGc-CGC-GGU-CGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 36626 0.66 0.556678
Target:  5'- cGGCgcacaaaCGGcGCGaaGCCGGCgCGCGGGCu -3'
miRNA:   3'- -UCGa------GCC-CGCcgCGGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 31936 0.66 0.556678
Target:  5'- gGGCUCugccGCGGCGCCAacgugcGCUaCACGGu- -3'
miRNA:   3'- -UCGAGcc--CGCCGCGGU------CGA-GUGCCug -5'
23663 3' -63.4 NC_005261.1 + 97845 0.66 0.556678
Target:  5'- gGGCggCGGGCGcCGCCgcGGCagCGCGGcCg -3'
miRNA:   3'- -UCGa-GCCCGCcGCGG--UCGa-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 1910 0.66 0.55571
Target:  5'- cGCUCaGGccagcgcGCGGCGCaCuGCgcCGCGGGCa -3'
miRNA:   3'- uCGAG-CC-------CGCCGCG-GuCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 48920 0.66 0.547981
Target:  5'- gAGCcCGGGCGccaGCGCCgcugucucgacGGCgcccgccucggugagCACGGGCa -3'
miRNA:   3'- -UCGaGCCCGC---CGCGG-----------UCGa--------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 125412 0.66 0.547017
Target:  5'- gAGCggcgCGGGCGGCGCUcaGGC-CGCc--- -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG--UCGaGUGccug -5'
23663 3' -63.4 NC_005261.1 + 95759 0.66 0.547017
Target:  5'- cGC-CGGG-GGCGCCGGgagcCUCGCGcGCu -3'
miRNA:   3'- uCGaGCCCgCCGCGGUC----GAGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 134071 0.66 0.547017
Target:  5'- aAGCUCGcGCGGCucauguGCgAGCUCuCGGcGCg -3'
miRNA:   3'- -UCGAGCcCGCCG------CGgUCGAGuGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 98004 0.66 0.547017
Target:  5'- aGGCggCGGG-GGCGCUGGCggcgaggCugGaGACg -3'
miRNA:   3'- -UCGa-GCCCgCCGCGGUCGa------GugC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.