miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 90206 0.66 0.508963
Target:  5'- cGCggGGGCGGCggagcgcccucGCgCGGCggGCGGGCg -3'
miRNA:   3'- uCGagCCCGCCG-----------CG-GUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97916 0.66 0.515546
Target:  5'- cGC-CGGGCguccccgcuguacuGGcCGCCAGCUCcgGCGG-Ca -3'
miRNA:   3'- uCGaGCCCG--------------CC-GCGGUCGAG--UGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 137042 0.66 0.518379
Target:  5'- cGGUggaGGGCGGacCGUCGGCaggCGCGGAg -3'
miRNA:   3'- -UCGag-CCCGCC--GCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 62304 0.66 0.527863
Target:  5'- cGCgCGGGCGcGCGgCGGCccCGCGGuCc -3'
miRNA:   3'- uCGaGCCCGC-CGCgGUCGa-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 132618 0.66 0.518379
Target:  5'- cGCcaggGGGCgcuGGCGCCgAGgaCGCGGGCg -3'
miRNA:   3'- uCGag--CCCG---CCGCGG-UCgaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 119995 0.66 0.518379
Target:  5'- cGCU-GGaG-GGCGCCGGCUaCGCGGcCg -3'
miRNA:   3'- uCGAgCC-CgCCGCGGUCGA-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 30898 0.66 0.515546
Target:  5'- gAGCUCGGGCuGGgGCCgcccggccccucccGGC-CGCcGGCg -3'
miRNA:   3'- -UCGAGCCCG-CCgCGG--------------UCGaGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 28262 0.66 0.515546
Target:  5'- uGCUCgGGGgGGCGCUguugccgccgccgcGGC-CGCGGuCg -3'
miRNA:   3'- uCGAG-CCCgCCGCGG--------------UCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 58304 0.66 0.560556
Target:  5'- gGGCgcggggaggGGGCGGC-CCAGCcgcccgagcaccgccUCGCGGAg -3'
miRNA:   3'- -UCGag-------CCCGCCGcGGUCG---------------AGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 31347 0.66 0.52501
Target:  5'- cGCUgcGGCGGCGCgUGGCcuggaugucgcagaUCGCGGACc -3'
miRNA:   3'- uCGAgcCCGCCGCG-GUCG--------------AGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 18658 0.66 0.527863
Target:  5'- aGGuCUCGGGCgGGCcCCAGCgggCGaagGGGCc -3'
miRNA:   3'- -UC-GAGCCCG-CCGcGGUCGa--GUg--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 29235 0.66 0.527863
Target:  5'- aGGCUaCGccGCGGCGCCGcGCg-ACGGGCc -3'
miRNA:   3'- -UCGA-GCc-CGCCGCGGU-CGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 51508 0.66 0.508963
Target:  5'- uGCUCGGccagauGCugGGCGCCGGg-CugGGGCu -3'
miRNA:   3'- uCGAGCC------CG--CCGCGGUCgaGugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 64113 0.66 0.518379
Target:  5'- cGGCaCGGGCGGCaCguGCcgCGCGGcCg -3'
miRNA:   3'- -UCGaGCCCGCCGcGguCGa-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 109879 0.66 0.518379
Target:  5'- gGGCccgCGGGCgGGCGCCccggGGCUaCAgccccUGGACc -3'
miRNA:   3'- -UCGa--GCCCG-CCGCGG----UCGA-GU-----GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134203 0.66 0.518379
Target:  5'- cGGCUCGGcgcgcgggucGCGGCgGCCGGCagcgUCgGCGuGGCg -3'
miRNA:   3'- -UCGAGCC----------CGCCG-CGGUCG----AG-UGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 94308 0.66 0.527863
Target:  5'- cGGCgacccaGGGgGGCGCCAGCccgaacUCGCGccgguaGGCg -3'
miRNA:   3'- -UCGag----CCCgCCGCGGUCG------AGUGC------CUG- -5'
23663 3' -63.4 NC_005261.1 + 126957 0.66 0.527863
Target:  5'- gGGCgCGGG-GGCGgCAGCgcgaaccgCGCGGGg -3'
miRNA:   3'- -UCGaGCCCgCCGCgGUCGa-------GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 72837 0.66 0.512721
Target:  5'- aGGCggUCGGccagGGCGCCAGCgcccaggcguggacCGCGGGCa -3'
miRNA:   3'- -UCG--AGCCcg--CCGCGGUCGa-------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 48418 0.66 0.527863
Target:  5'- uGGCUCaucagcaGGCGGUa-CAGCUCGCGGuGCg -3'
miRNA:   3'- -UCGAGc------CCGCCGcgGUCGAGUGCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.