miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 98004 0.66 0.547017
Target:  5'- aGGCggCGGG-GGCGCUGGCggcgaggCugGaGACg -3'
miRNA:   3'- -UCGa-GCCCgCCGCGGUCGa------GugC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 137042 0.66 0.518379
Target:  5'- cGGUggaGGGCGGacCGUCGGCaggCGCGGAg -3'
miRNA:   3'- -UCGag-CCCGCC--GCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 94308 0.66 0.527863
Target:  5'- cGGCgacccaGGGgGGCGCCAGCccgaacUCGCGccgguaGGCg -3'
miRNA:   3'- -UCGag----CCCgCCGCGGUCG------AGUGC------CUG- -5'
23663 3' -63.4 NC_005261.1 + 95759 0.66 0.547017
Target:  5'- cGC-CGGG-GGCGCCGGgagcCUCGCGcGCu -3'
miRNA:   3'- uCGaGCCCgCCGCGGUC----GAGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 134203 0.66 0.518379
Target:  5'- cGGCUCGGcgcgcgggucGCGGCgGCCGGCagcgUCgGCGuGGCg -3'
miRNA:   3'- -UCGAGCC----------CGCCG-CGGUCG----AG-UGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 29235 0.66 0.527863
Target:  5'- aGGCUaCGccGCGGCGCCGcGCg-ACGGGCc -3'
miRNA:   3'- -UCGA-GCc-CGCCGCGGU-CGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 131420 0.66 0.541247
Target:  5'- cGCUgcCGGcaGCGGCGCCGGCgccccCcuugcgccgcgccucGCGGGCg -3'
miRNA:   3'- uCGA--GCC--CGCCGCGGUCGa----G---------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134071 0.66 0.547017
Target:  5'- aAGCUCGcGCGGCucauguGCgAGCUCuCGGcGCg -3'
miRNA:   3'- -UCGAGCcCGCCG------CGgUCGAGuGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 109879 0.66 0.518379
Target:  5'- gGGCccgCGGGCgGGCGCCccggGGCUaCAgccccUGGACc -3'
miRNA:   3'- -UCGa--GCCCG-CCGCGG----UCGA-GU-----GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134852 0.66 0.53741
Target:  5'- gAGgaCGGGgacaaGGCGCCcGCgccccCGCGGGCc -3'
miRNA:   3'- -UCgaGCCCg----CCGCGGuCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 90206 0.66 0.508963
Target:  5'- cGCggGGGCGGCggagcgcccucGCgCGGCggGCGGGCg -3'
miRNA:   3'- uCGagCCCGCCG-----------CG-GUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1910 0.66 0.55571
Target:  5'- cGCUCaGGccagcgcGCGGCGCaCuGCgcCGCGGGCa -3'
miRNA:   3'- uCGAG-CC-------CGCCGCG-GuCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 120631 0.66 0.547017
Target:  5'- uGCUgGuGGCGGCccuguGCCuGCggcgcaaggCGCGGGCg -3'
miRNA:   3'- uCGAgC-CCGCCG-----CGGuCGa--------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29133 0.66 0.53741
Target:  5'- cGC-CGGGgGGCGCCccgccggacccGCcCGCGGAUc -3'
miRNA:   3'- uCGaGCCCgCCGCGGu----------CGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97371 0.66 0.527863
Target:  5'- cGGCcCGGGCGuGuCGCCgcgcGGCUuucgcgccugcCGCGGGCu -3'
miRNA:   3'- -UCGaGCCCGC-C-GCGG----UCGA-----------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 64113 0.66 0.518379
Target:  5'- cGGCaCGGGCGGCaCguGCcgCGCGGcCg -3'
miRNA:   3'- -UCGaGCCCGCCGcGguCGa-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 125412 0.66 0.547017
Target:  5'- gAGCggcgCGGGCGGCGCUcaGGC-CGCc--- -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG--UCGaGUGccug -5'
23663 3' -63.4 NC_005261.1 + 51508 0.66 0.508963
Target:  5'- uGCUCGGccagauGCugGGCGCCGGg-CugGGGCu -3'
miRNA:   3'- uCGAGCC------CG--CCGCGGUCgaGugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33775 0.66 0.547017
Target:  5'- nGGCcCGcGGCGaGCGCUgGGCcccgCGCGGGCg -3'
miRNA:   3'- -UCGaGC-CCGC-CGCGG-UCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 30898 0.66 0.515546
Target:  5'- gAGCUCGGGCuGGgGCCgcccggccccucccGGC-CGCcGGCg -3'
miRNA:   3'- -UCGAGCCCG-CCgCGG--------------UCGaGUGcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.