miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 72837 0.66 0.512721
Target:  5'- aGGCggUCGGccagGGCGCCAGCgcccaggcguggacCGCGGGCa -3'
miRNA:   3'- -UCG--AGCCcg--CCGCGGUCGa-------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 131420 0.66 0.541247
Target:  5'- cGCUgcCGGcaGCGGCGCCGGCgccccCcuugcgccgcgccucGCGGGCg -3'
miRNA:   3'- uCGA--GCC--CGCCGCGGUCGa----G---------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 18658 0.66 0.527863
Target:  5'- aGGuCUCGGGCgGGCcCCAGCgggCGaagGGGCc -3'
miRNA:   3'- -UC-GAGCCCG-CCGcGGUCGa--GUg--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 94308 0.66 0.527863
Target:  5'- cGGCgacccaGGGgGGCGCCAGCccgaacUCGCGccgguaGGCg -3'
miRNA:   3'- -UCGag----CCCgCCGCGGUCG------AGUGC------CUG- -5'
23663 3' -63.4 NC_005261.1 + 137042 0.66 0.518379
Target:  5'- cGGUggaGGGCGGacCGUCGGCaggCGCGGAg -3'
miRNA:   3'- -UCGag-CCCGCC--GCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 51508 0.66 0.508963
Target:  5'- uGCUCGGccagauGCugGGCGCCGGg-CugGGGCu -3'
miRNA:   3'- uCGAGCC------CG--CCGCGGUCgaGugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 28262 0.66 0.515546
Target:  5'- uGCUCgGGGgGGCGCUguugccgccgccgcGGC-CGCGGuCg -3'
miRNA:   3'- uCGAG-CCCgCCGCGG--------------UCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 97916 0.66 0.515546
Target:  5'- cGC-CGGGCguccccgcuguacuGGcCGCCAGCUCcgGCGG-Ca -3'
miRNA:   3'- uCGaGCCCG--------------CC-GCGGUCGAG--UGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 126957 0.66 0.527863
Target:  5'- gGGCgCGGG-GGCGgCAGCgcgaaccgCGCGGGg -3'
miRNA:   3'- -UCGaGCCCgCCGCgGUCGa-------GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 134203 0.66 0.518379
Target:  5'- cGGCUCGGcgcgcgggucGCGGCgGCCGGCagcgUCgGCGuGGCg -3'
miRNA:   3'- -UCGAGCC----------CGCCG-CGGUCG----AG-UGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 48418 0.66 0.527863
Target:  5'- uGGCUCaucagcaGGCGGUa-CAGCUCGCGGuGCg -3'
miRNA:   3'- -UCGAGc------CCGCCGcgGUCGAGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 36626 0.66 0.556678
Target:  5'- cGGCgcacaaaCGGcGCGaaGCCGGCgCGCGGGCu -3'
miRNA:   3'- -UCGa------GCC-CGCcgCGGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134071 0.66 0.547017
Target:  5'- aAGCUCGcGCGGCucauguGCgAGCUCuCGGcGCg -3'
miRNA:   3'- -UCGAGCcCGCCG------CGgUCGAGuGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 77653 0.66 0.518379
Target:  5'- cGCcgaCGGcCGGCGCCugcaGGCgcagggCGCGGACg -3'
miRNA:   3'- uCGa--GCCcGCCGCGG----UCGa-----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 81449 0.67 0.454132
Target:  5'- cGCggCGGGCGcCGCCAGCagCA-GGGCc -3'
miRNA:   3'- uCGa-GCCCGCcGCGGUCGa-GUgCCUG- -5'
23663 3' -63.4 NC_005261.1 + 52671 0.67 0.463054
Target:  5'- cGCacuUCGaGCGG-GCCcuGCUCGCGGGCg -3'
miRNA:   3'- uCG---AGCcCGCCgCGGu-CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 43772 0.67 0.463054
Target:  5'- uGCUCgugGGGCGGCGCgCGGagggcgcCGCGGGu -3'
miRNA:   3'- uCGAG---CCCGCCGCG-GUCga-----GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 16406 0.67 0.463054
Target:  5'- cGC-CGGGCGGUGCgGGagaggccccCUCgacgGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGCGgUC---------GAG----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29344 0.67 0.463054
Target:  5'- cGCUUcGGCGGCGCgGGCgacacUCGCgaGGGCc -3'
miRNA:   3'- uCGAGcCCGCCGCGgUCG-----AGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 13068 0.67 0.463054
Target:  5'- uGC-CGGGCGcgucCGCCGGCccgUCGgCGGGCg -3'
miRNA:   3'- uCGaGCCCGCc---GCGGUCG---AGU-GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.