miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 134948 0.67 0.472067
Target:  5'- gAGCcgaUGGGCgagGGCGCCGGCgaCGCaGACg -3'
miRNA:   3'- -UCGa--GCCCG---CCGCGGUCGa-GUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 68109 0.67 0.463054
Target:  5'- aAGUUCGGGCuggagcuGCGCgGGC-CGCGGcGCg -3'
miRNA:   3'- -UCGAGCCCGc------CGCGgUCGaGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 87484 0.67 0.481168
Target:  5'- aGGUUCGGcGCGGCcguGCUGGCgCGCaGGCg -3'
miRNA:   3'- -UCGAGCC-CGCCG---CGGUCGaGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 125804 0.67 0.490353
Target:  5'- gGGCUUGGGcCGGgGCCgccgcgAGCggggC-CGGACc -3'
miRNA:   3'- -UCGAGCCC-GCCgCGG------UCGa---GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 43196 0.67 0.490353
Target:  5'- aGGCa-GaGGUGGUG-CGGCUCGCGGAg -3'
miRNA:   3'- -UCGagC-CCGCCGCgGUCGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 19067 0.67 0.445304
Target:  5'- gGGCUgCGcGGCucucGGCGCguGCUUGCGuGGCg -3'
miRNA:   3'- -UCGA-GC-CCG----CCGCGguCGAGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 118666 0.67 0.445304
Target:  5'- cGCUCgGGGCugagggcggcgGGCGCUGGCgcaCGCGcGGCg -3'
miRNA:   3'- uCGAG-CCCG-----------CCGCGGUCGa--GUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 58893 0.67 0.481168
Target:  5'- gGGcCUCGcaGGCGcGCGCCAGCgCGCGcACc -3'
miRNA:   3'- -UC-GAGC--CCGC-CGCGGUCGaGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 21697 0.67 0.490353
Target:  5'- cGCgucgCGGGCGaGCGCU---UCACGGAg -3'
miRNA:   3'- uCGa---GCCCGC-CGCGGucgAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 40679 0.67 0.481168
Target:  5'- cGCcgUCGGGgagcCGGCGCCGGC---CGGGCu -3'
miRNA:   3'- uCG--AGCCC----GCCGCGGUCGaguGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 43772 0.67 0.463054
Target:  5'- uGCUCgugGGGCGGCGCgCGGagggcgcCGCGGGu -3'
miRNA:   3'- uCGAG---CCCGCCGCG-GUCga-----GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 18782 0.67 0.490353
Target:  5'- cAGCagCGGcGagGGUGCCGGCUUgagcggcgGCGGGCa -3'
miRNA:   3'- -UCGa-GCC-Cg-CCGCGGUCGAG--------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 34927 0.67 0.481168
Target:  5'- cGGCcacgCGGGgGGCgGCCGGCgcgaCcCGGGCc -3'
miRNA:   3'- -UCGa---GCCCgCCG-CGGUCGa---GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 59724 0.67 0.463054
Target:  5'- cGC-CGGGCGGCaGCggCGGCgCGCGGcCg -3'
miRNA:   3'- uCGaGCCCGCCG-CG--GUCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 109195 0.67 0.463054
Target:  5'- cGCgUCGGGCGuGCGCaGGCgcucguaggCGCGGcACg -3'
miRNA:   3'- uCG-AGCCCGC-CGCGgUCGa--------GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 127845 0.67 0.463054
Target:  5'- cAGCggacggggCGGucGCGGCGCCAGggCACGaGCg -3'
miRNA:   3'- -UCGa-------GCC--CGCCGCGGUCgaGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 13068 0.67 0.463054
Target:  5'- uGC-CGGGCGcgucCGCCGGCccgUCGgCGGGCg -3'
miRNA:   3'- uCGaGCCCGCc---GCGGUCG---AGU-GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 16406 0.67 0.463054
Target:  5'- cGC-CGGGCGGUGCgGGagaggccccCUCgacgGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGCGgUC---------GAG----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 95640 0.67 0.481168
Target:  5'- cGGCUgGGcgagcgcgacgcGCGGCGCC-GCg-ACGGGCg -3'
miRNA:   3'- -UCGAgCC------------CGCCGCGGuCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 130238 0.67 0.490353
Target:  5'- cGCUCaGGCGccGCGCCAGCggcucgUACugcgGGGCg -3'
miRNA:   3'- uCGAGcCCGC--CGCGGUCGa-----GUG----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.