Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23663 | 3' | -63.4 | NC_005261.1 | + | 134562 | 0.75 | 0.142613 |
Target: 5'- uGCU-GGGCGGCGCCgcGGCUgCGCaGGGCg -3' miRNA: 3'- uCGAgCCCGCCGCGG--UCGA-GUG-CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 92787 | 0.74 | 0.186779 |
Target: 5'- gGGCUCGGGgucggggucCGGuCGCCgGGCgCGCGGGCg -3' miRNA: 3'- -UCGAGCCC---------GCC-GCGG-UCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 55709 | 0.74 | 0.186327 |
Target: 5'- cGCUUGGGCGGCcacGCguGUcucuaugUCGCGGGCg -3' miRNA: 3'- uCGAGCCCGCCG---CGguCG-------AGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 3839 | 0.74 | 0.182311 |
Target: 5'- gGGCgcuggCGGcaGCGGCGCCGGCgccgCGCGGcCg -3' miRNA: 3'- -UCGa----GCC--CGCCGCGGUCGa---GUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 37366 | 0.74 | 0.182311 |
Target: 5'- uGCUCGccgcccgaGGCGGCGCUguGGUaCGCGGACa -3' miRNA: 3'- uCGAGC--------CCGCCGCGG--UCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 132900 | 0.74 | 0.177937 |
Target: 5'- gGGCgccgCGGGCGGCGCCgAGCg-GCGG-Cu -3' miRNA: 3'- -UCGa---GCCCGCCGCGG-UCGagUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 20559 | 0.74 | 0.177937 |
Target: 5'- uGGCggCGGGCugcgcagcGGCGCCGGCggCGCGGGu -3' miRNA: 3'- -UCGa-GCCCG--------CCGCGGUCGa-GUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 98357 | 0.74 | 0.16947 |
Target: 5'- gGGCggGGGUgGGCGCgGGCUCugGCGGGCg -3' miRNA: 3'- -UCGagCCCG-CCGCGgUCGAG--UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 105269 | 0.74 | 0.165373 |
Target: 5'- aGGCUcggCGGGCGGCagcGCCGGCgagCcCGGGCg -3' miRNA: 3'- -UCGA---GCCCGCCG---CGGUCGa--GuGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 122348 | 0.73 | 0.215654 |
Target: 5'- gAGCUCGccuGGCGGC-CgCGGCUCGCGcGGCc -3' miRNA: 3'- -UCGAGC---CCGCCGcG-GUCGAGUGC-CUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 84126 | 0.73 | 0.205626 |
Target: 5'- gGGCagCGGGCGGgGUC-GCUgGCGGGCc -3' miRNA: 3'- -UCGa-GCCCGCCgCGGuCGAgUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 4397 | 0.73 | 0.205626 |
Target: 5'- cGGC-CGGGCGGCGgCGGCgcgCugcCGGGCc -3' miRNA: 3'- -UCGaGCCCGCCGCgGUCGa--Gu--GCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 74818 | 0.73 | 0.205626 |
Target: 5'- uGGCggaGGUGGcCGCCGuGCUCGCGGACc -3' miRNA: 3'- -UCGagcCCGCC-GCGGU-CGAGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 68699 | 0.73 | 0.200765 |
Target: 5'- cGGCgCGgacgacGGCGGCGCCGGCccUCACGcGGCg -3' miRNA: 3'- -UCGaGC------CCGCCGCGGUCG--AGUGC-CUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 38942 | 0.73 | 0.200765 |
Target: 5'- cGGC-CGGGCGG-GCCgcGGCgCGCGGGCu -3' miRNA: 3'- -UCGaGCCCGCCgCGG--UCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 94260 | 0.73 | 0.200765 |
Target: 5'- cGGCgcaGGGCGGCGCCgcgaGGCUCuuGGcGCa -3' miRNA: 3'- -UCGag-CCCGCCGCGG----UCGAGugCC-UG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 75580 | 0.73 | 0.200765 |
Target: 5'- gGGCggCGGcGCGGCGCUcGCgcgcgcCGCGGACg -3' miRNA: 3'- -UCGa-GCC-CGCCGCGGuCGa-----GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 2983 | 0.73 | 0.197897 |
Target: 5'- aGGCUgGGGCucggccuggcggcccGGCGCCggGGCUCccGCGGGCc -3' miRNA: 3'- -UCGAgCCCG---------------CCGCGG--UCGAG--UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 118374 | 0.73 | 0.191343 |
Target: 5'- cGCUgGGGCgcgcggcccgaGGCGCUGGCggcCGCGGGCg -3' miRNA: 3'- uCGAgCCCG-----------CCGCGGUCGa--GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 127793 | 0.73 | 0.215654 |
Target: 5'- gAGCggCGGGcCGGCGCCgcGGCg-GCGGGCc -3' miRNA: 3'- -UCGa-GCCC-GCCGCGG--UCGagUGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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