miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 38816 1.09 0.000504
Target:  5'- gAGCUCGGGCGGCGCCAGCUCACGGACa -3'
miRNA:   3'- -UCGAGCCCGCCGCGGUCGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 73363 0.84 0.035436
Target:  5'- cGGCUCaGGCGGCGCCAGCagCGCGGcCa -3'
miRNA:   3'- -UCGAGcCCGCCGCGGUCGa-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 98493 0.83 0.043742
Target:  5'- gGGCUCGGGCggguaaGGUGCCGGCgUACGGGCa -3'
miRNA:   3'- -UCGAGCCCG------CCGCGGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 76460 0.79 0.07368
Target:  5'- cGGCgacGGCGGCGCCGGCgcgcgCGCGGACc -3'
miRNA:   3'- -UCGagcCCGCCGCGGUCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 13108 0.78 0.095269
Target:  5'- cGGCUCGGG-GGCGUCGGCggcCGCGGGg -3'
miRNA:   3'- -UCGAGCCCgCCGCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 83318 0.78 0.100254
Target:  5'- cAGCUCGGGCGGCGCCAcGC-CGCccGCc -3'
miRNA:   3'- -UCGAGCCCGCCGCGGU-CGaGUGccUG- -5'
23663 3' -63.4 NC_005261.1 + 81360 0.77 0.102838
Target:  5'- gGGCUugCGGGgGGCGCCgGGCUCGCuggGGGCg -3'
miRNA:   3'- -UCGA--GCCCgCCGCGG-UCGAGUG---CCUG- -5'
23663 3' -63.4 NC_005261.1 + 33592 0.77 0.113812
Target:  5'- gAGCaccagGGGCGGCGCCGGC--GCGGGCg -3'
miRNA:   3'- -UCGag---CCCGCCGCGGUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 52972 0.77 0.113812
Target:  5'- cGC-CGGuGCGGCGCCGGCagGCGGGg -3'
miRNA:   3'- uCGaGCC-CGCCGCGGUCGagUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 12096 0.77 0.116722
Target:  5'- cGGCUCaaaGGcGCGGCGCCAGCUCuagcgccaGGAUg -3'
miRNA:   3'- -UCGAG---CC-CGCCGCGGUCGAGug------CCUG- -5'
23663 3' -63.4 NC_005261.1 + 92489 0.76 0.119701
Target:  5'- gAGCUCGcGGaCGGCgGCCAGCUCgucaGCGGGg -3'
miRNA:   3'- -UCGAGC-CC-GCCG-CGGUCGAG----UGCCUg -5'
23663 3' -63.4 NC_005261.1 + 97143 0.76 0.122443
Target:  5'- cGCUCGGaggcGCuGGCGCCGGCccggccggcugggUCGCGGGCg -3'
miRNA:   3'- uCGAGCC----CG-CCGCGGUCG-------------AGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 14124 0.76 0.125873
Target:  5'- cGGCUCGGGCGGUggGCagucGCUCGCgaGGACg -3'
miRNA:   3'- -UCGAGCCCGCCG--CGgu--CGAGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 121633 0.76 0.129069
Target:  5'- cGCUC-GGCGGCcgccGCCGGCgagCGCGGGCu -3'
miRNA:   3'- uCGAGcCCGCCG----CGGUCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 96862 0.76 0.132339
Target:  5'- gGGCUCGGGgGGCGCgGGUagcgUGCGGAUc -3'
miRNA:   3'- -UCGAGCCCgCCGCGgUCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97577 0.76 0.135685
Target:  5'- uGGCUC-GGUGGCGCgGGCggaGCGGGCg -3'
miRNA:   3'- -UCGAGcCCGCCGCGgUCGag-UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 44021 0.75 0.142613
Target:  5'- cGGCgcggCGGGCGGcCGCCgcgcGGCggcCGCGGGCg -3'
miRNA:   3'- -UCGa---GCCCGCC-GCGG----UCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134562 0.75 0.142613
Target:  5'- uGCU-GGGCGGCGCCgcGGCUgCGCaGGGCg -3'
miRNA:   3'- uCGAgCCCGCCGCGG--UCGA-GUG-CCUG- -5'
23663 3' -63.4 NC_005261.1 + 88180 0.75 0.146196
Target:  5'- gGGCgacgCcGGCGGCGCCGGCgagGCGGGCc -3'
miRNA:   3'- -UCGa---GcCCGCCGCGGUCGag-UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1983 0.75 0.149862
Target:  5'- cGGC-CGGGCcaucGGCgGCCAGUUCGCGGGg -3'
miRNA:   3'- -UCGaGCCCG----CCG-CGGUCGAGUGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.