miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 70991 0.75 0.157445
Target:  5'- uGGCgcgCGGGCGGCcgccagGCCAGCUCGCcgcgcaGGAa -3'
miRNA:   3'- -UCGa--GCCCGCCG------CGGUCGAGUG------CCUg -5'
23663 3' -63.4 NC_005261.1 + 105269 0.74 0.165373
Target:  5'- aGGCUcggCGGGCGGCagcGCCGGCgagCcCGGGCg -3'
miRNA:   3'- -UCGA---GCCCGCCG---CGGUCGa--GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 98357 0.74 0.16947
Target:  5'- gGGCggGGGUgGGCGCgGGCUCugGCGGGCg -3'
miRNA:   3'- -UCGagCCCG-CCGCGgUCGAG--UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 20559 0.74 0.177937
Target:  5'- uGGCggCGGGCugcgcagcGGCGCCGGCggCGCGGGu -3'
miRNA:   3'- -UCGa-GCCCG--------CCGCGGUCGa-GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 132900 0.74 0.177937
Target:  5'- gGGCgccgCGGGCGGCGCCgAGCg-GCGG-Cu -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG-UCGagUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 3839 0.74 0.182311
Target:  5'- gGGCgcuggCGGcaGCGGCGCCGGCgccgCGCGGcCg -3'
miRNA:   3'- -UCGa----GCC--CGCCGCGGUCGa---GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 37366 0.74 0.182311
Target:  5'- uGCUCGccgcccgaGGCGGCGCUguGGUaCGCGGACa -3'
miRNA:   3'- uCGAGC--------CCGCCGCGG--UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 55709 0.74 0.186327
Target:  5'- cGCUUGGGCGGCcacGCguGUcucuaugUCGCGGGCg -3'
miRNA:   3'- uCGAGCCCGCCG---CGguCG-------AGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 92787 0.74 0.186779
Target:  5'- gGGCUCGGGgucggggucCGGuCGCCgGGCgCGCGGGCg -3'
miRNA:   3'- -UCGAGCCC---------GCC-GCGG-UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2624 0.73 0.191343
Target:  5'- cGC-CGGGCGGCauggggcCCAGCaCGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGc------GGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118374 0.73 0.191343
Target:  5'- cGCUgGGGCgcgcggcccgaGGCGCUGGCggcCGCGGGCg -3'
miRNA:   3'- uCGAgCCCG-----------CCGCGGUCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2983 0.73 0.197897
Target:  5'- aGGCUgGGGCucggccuggcggcccGGCGCCggGGCUCccGCGGGCc -3'
miRNA:   3'- -UCGAgCCCG---------------CCGCGG--UCGAG--UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 75580 0.73 0.200765
Target:  5'- gGGCggCGGcGCGGCGCUcGCgcgcgcCGCGGACg -3'
miRNA:   3'- -UCGa-GCC-CGCCGCGGuCGa-----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 94260 0.73 0.200765
Target:  5'- cGGCgcaGGGCGGCGCCgcgaGGCUCuuGGcGCa -3'
miRNA:   3'- -UCGag-CCCGCCGCGG----UCGAGugCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 38942 0.73 0.200765
Target:  5'- cGGC-CGGGCGG-GCCgcGGCgCGCGGGCu -3'
miRNA:   3'- -UCGaGCCCGCCgCGG--UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 68699 0.73 0.200765
Target:  5'- cGGCgCGgacgacGGCGGCGCCGGCccUCACGcGGCg -3'
miRNA:   3'- -UCGaGC------CCGCCGCGGUCG--AGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 74818 0.73 0.205626
Target:  5'- uGGCggaGGUGGcCGCCGuGCUCGCGGACc -3'
miRNA:   3'- -UCGagcCCGCC-GCGGU-CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 4397 0.73 0.205626
Target:  5'- cGGC-CGGGCGGCGgCGGCgcgCugcCGGGCc -3'
miRNA:   3'- -UCGaGCCCGCCGCgGUCGa--Gu--GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 84126 0.73 0.205626
Target:  5'- gGGCagCGGGCGGgGUC-GCUgGCGGGCc -3'
miRNA:   3'- -UCGa-GCCCGCCgCGGuCGAgUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 127793 0.73 0.215654
Target:  5'- gAGCggCGGGcCGGCGCCgcGGCg-GCGGGCc -3'
miRNA:   3'- -UCGa-GCCC-GCCGCGG--UCGagUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.