miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 127793 0.73 0.215654
Target:  5'- gAGCggCGGGcCGGCGCCgcGGCg-GCGGGCc -3'
miRNA:   3'- -UCGa-GCCC-GCCGCGG--UCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97609 0.73 0.220823
Target:  5'- gGGCggagCGGGCGGaGCgGGCggaGCGGGCg -3'
miRNA:   3'- -UCGa---GCCCGCCgCGgUCGag-UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97744 0.73 0.220823
Target:  5'- uGGCagGGGCGGgGCgGGCUCgGCGGcGCg -3'
miRNA:   3'- -UCGagCCCGCCgCGgUCGAG-UGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 2814 0.73 0.220823
Target:  5'- gGGC-CGGGCGGCcCCAGCccgagCuCGGGCg -3'
miRNA:   3'- -UCGaGCCCGCCGcGGUCGa----GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2279 0.72 0.226098
Target:  5'- cGC-CGGGCGGCGCCgccAGCgccucCcCGGGCa -3'
miRNA:   3'- uCGaGCCCGCCGCGG---UCGa----GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 93837 0.72 0.231479
Target:  5'- cGC-CGGGCGGCGCCgccgAGCagucCACGaGGCg -3'
miRNA:   3'- uCGaGCCCGCCGCGG----UCGa---GUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 123144 0.72 0.233661
Target:  5'- cGGCUauauaggcauacgaGGGCGGgGCgGGCgCGCGGGCg -3'
miRNA:   3'- -UCGAg-------------CCCGCCgCGgUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 77248 0.72 0.236413
Target:  5'- cAGC-CGGGCucaaaagGGCGC--GCUCGCGGGCg -3'
miRNA:   3'- -UCGaGCCCG-------CCGCGguCGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 58100 0.72 0.236967
Target:  5'- -cCUCGGGCGGCaCCAGCcgCGCGaGCa -3'
miRNA:   3'- ucGAGCCCGCCGcGGUCGa-GUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 59401 0.72 0.236967
Target:  5'- gAGCcCGGGCucgccGGCGCCGGCgcugUCGCGcGGCc -3'
miRNA:   3'- -UCGaGCCCG-----CCGCGGUCG----AGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 36977 0.72 0.242564
Target:  5'- gAGCUCGGuGCGGgcuccaGCCggAGCcCGCGGGCu -3'
miRNA:   3'- -UCGAGCC-CGCCg-----CGG--UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 37199 0.72 0.242564
Target:  5'- cGCUgCuGGCGGCGCUacuguGGCUCccGCGGGCu -3'
miRNA:   3'- uCGA-GcCCGCCGCGG-----UCGAG--UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 74504 0.72 0.248271
Target:  5'- cGCUCuucgGGGCGGCGCCggGGC-CAUGGcGCu -3'
miRNA:   3'- uCGAG----CCCGCCGCGG--UCGaGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 12717 0.72 0.248271
Target:  5'- cGGCUCGGGCGcGCgggcccGCCGGCcCccuggGCGGGCc -3'
miRNA:   3'- -UCGAGCCCGC-CG------CGGUCGaG-----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 5123 0.72 0.248271
Target:  5'- cGGCgCGGGCGGCccGCCGGCgcUCGCGcGCc -3'
miRNA:   3'- -UCGaGCCCGCCG--CGGUCG--AGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 39462 0.71 0.260017
Target:  5'- cGCgCGGcGCGGCGCCccaacgGGCccgcCGCGGACg -3'
miRNA:   3'- uCGaGCC-CGCCGCGG------UCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97221 0.71 0.265449
Target:  5'- cGCUCGGaggcGCuGGCGCCGGCccggccggcugggUCGCGGGg -3'
miRNA:   3'- uCGAGCC----CG-CCGCGGUCG-------------AGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 28764 0.71 0.266058
Target:  5'- cGGC-CGGG-GGCGCCugGGCcgcggCGCGGGCg -3'
miRNA:   3'- -UCGaGCCCgCCGCGG--UCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29789 0.71 0.266058
Target:  5'- uGGCcuaccCGGaggcCGGCGCCGGCggCGCGGGCg -3'
miRNA:   3'- -UCGa----GCCc---GCCGCGGUCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 48305 0.71 0.266058
Target:  5'- aGGcCUCGGGgGGCGCgucgggcccgGGCUCGgGGGCg -3'
miRNA:   3'- -UC-GAGCCCgCCGCGg---------UCGAGUgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.