miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 1083 0.71 0.271592
Target:  5'- cGCUCcaGGGCGaGC-CCGGCUCgucguccgaggacGCGGACg -3'
miRNA:   3'- uCGAG--CCCGC-CGcGGUCGAG-------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 97098 0.71 0.272212
Target:  5'- gGGC-CGGG-GGCGCCAGCcgggcCGCGGcCg -3'
miRNA:   3'- -UCGaGCCCgCCGCGGUCGa----GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 110237 0.71 0.272212
Target:  5'- cAGCgugggCGGcGCGGCGCCcggggGGCU-GCGGGCc -3'
miRNA:   3'- -UCGa----GCC-CGCCGCGG-----UCGAgUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 116479 0.71 0.272212
Target:  5'- cGGCgCGGGCGGgGCgGGCgCGCGGuAUa -3'
miRNA:   3'- -UCGaGCCCGCCgCGgUCGaGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 55178 0.71 0.28422
Target:  5'- cGGCUCGcGGggcggauCGGCGCaCGGCguagCGCGGAUc -3'
miRNA:   3'- -UCGAGC-CC-------GCCGCG-GUCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33742 0.71 0.284863
Target:  5'- -cCUCGcGCGGCGCCGgggccgggcccGCUCGCGGGg -3'
miRNA:   3'- ucGAGCcCGCCGCGGU-----------CGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 64486 0.71 0.284863
Target:  5'- gGGUgcagCGGGUGGCGCgGGUgcucggggccCGCGGGCg -3'
miRNA:   3'- -UCGa---GCCCGCCGCGgUCGa---------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 101229 0.71 0.284863
Target:  5'- cGCgUCGaGGUGGCGCCucAGCUCGCGcaGCg -3'
miRNA:   3'- uCG-AGC-CCGCCGCGG--UCGAGUGCc-UG- -5'
23663 3' -63.4 NC_005261.1 + 1042 0.71 0.29136
Target:  5'- gGGCggCGGGCGGCGgCguuAGCggCGCGGGg -3'
miRNA:   3'- -UCGa-GCCCGCCGCgG---UCGa-GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 93674 0.7 0.297973
Target:  5'- cGCggGcGGCGGCGCCGGCggggCGCcGGCg -3'
miRNA:   3'- uCGagC-CCGCCGCGGUCGa---GUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 24553 0.7 0.297973
Target:  5'- uGGC-CGGGCGGCGCCAGgUCcCa--- -3'
miRNA:   3'- -UCGaGCCCGCCGCGGUCgAGuGccug -5'
23663 3' -63.4 NC_005261.1 + 17192 0.7 0.297973
Target:  5'- uGC-CGcGGCGGCGagCAGCgcgcccagCACGGACa -3'
miRNA:   3'- uCGaGC-CCGCCGCg-GUCGa-------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 70669 0.7 0.302671
Target:  5'- cGGCcgCGGGCcgcaccuccagccaGGCGuCCAGCgcggcccgCGCGGGCa -3'
miRNA:   3'- -UCGa-GCCCG--------------CCGC-GGUCGa-------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 17731 0.7 0.304702
Target:  5'- --aUCGGaGCGGCGCUcggAGCggGCGGACu -3'
miRNA:   3'- ucgAGCC-CGCCGCGG---UCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 86487 0.7 0.304702
Target:  5'- cGGC-CGGGcCGGCGCCugucuGCggCAgGGGCu -3'
miRNA:   3'- -UCGaGCCC-GCCGCGGu----CGa-GUgCCUG- -5'
23663 3' -63.4 NC_005261.1 + 67082 0.7 0.310857
Target:  5'- cGCUCGGGCgguccauGGCGCgAcGCggUGCGGGCg -3'
miRNA:   3'- uCGAGCCCG-------CCGCGgU-CGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 38540 0.7 0.311547
Target:  5'- cGC-CGGGCacaGCGCCGGCgCGCGGcCa -3'
miRNA:   3'- uCGaGCCCGc--CGCGGUCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 114343 0.7 0.311547
Target:  5'- uGGCUCGaGCGGCGCgUGGC-CGCGGcCg -3'
miRNA:   3'- -UCGAGCcCGCCGCG-GUCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 45951 0.7 0.317106
Target:  5'- gGGCcgccaGGGCGccguugagcaugcGCGCCAGCUCuugcagcACGGGCg -3'
miRNA:   3'- -UCGag---CCCGC-------------CGCGGUCGAG-------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 57870 0.7 0.318508
Target:  5'- cGCUCGGGuCGGgaaGUCGGCcggCACGGGg -3'
miRNA:   3'- uCGAGCCC-GCCg--CGGUCGa--GUGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.