miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 98004 0.66 0.547017
Target:  5'- aGGCggCGGG-GGCGCUGGCggcgaggCugGaGACg -3'
miRNA:   3'- -UCGa-GCCCgCCGCGGUCGa------GugC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 125412 0.66 0.547017
Target:  5'- gAGCggcgCGGGCGGCGCUcaGGC-CGCc--- -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG--UCGaGUGccug -5'
23663 3' -63.4 NC_005261.1 + 29175 0.66 0.547017
Target:  5'- aGGC-CaGGGCccGGCGCCcucgccgcGGCgcccgCGCGGGCg -3'
miRNA:   3'- -UCGaG-CCCG--CCGCGG--------UCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 120631 0.66 0.547017
Target:  5'- uGCUgGuGGCGGCccuguGCCuGCggcgcaaggCGCGGGCg -3'
miRNA:   3'- uCGAgC-CCGCCG-----CGGuCGa--------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 131420 0.66 0.541247
Target:  5'- cGCUgcCGGcaGCGGCGCCGGCgccccCcuugcgccgcgccucGCGGGCg -3'
miRNA:   3'- uCGA--GCC--CGCCGCGGUCGa----G---------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118852 0.66 0.538369
Target:  5'- cGCggaGGGCGGCGCgcccgCGGCccuggccucggccacCGCGGGCg -3'
miRNA:   3'- uCGag-CCCGCCGCG-----GUCGa--------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 98708 0.66 0.53741
Target:  5'- gAGCUgGGGcCGGgGuCCGGCcUUggGGGCa -3'
miRNA:   3'- -UCGAgCCC-GCCgC-GGUCG-AGugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 120429 0.66 0.53741
Target:  5'- gGGCUggugaacaugCGcGGCGuGCGCCuGCUCuccgcgauagACGGGCc -3'
miRNA:   3'- -UCGA----------GC-CCGC-CGCGGuCGAG----------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29133 0.66 0.53741
Target:  5'- cGC-CGGGgGGCGCCccgccggacccGCcCGCGGAUc -3'
miRNA:   3'- uCGaGCCCgCCGCGGu----------CGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 111974 0.66 0.53741
Target:  5'- aAGCUCGaaGGCggGGCGCUggAGUcCAUGGGCc -3'
miRNA:   3'- -UCGAGC--CCG--CCGCGG--UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134852 0.66 0.53741
Target:  5'- gAGgaCGGGgacaaGGCGCCcGCgccccCGCGGGCc -3'
miRNA:   3'- -UCgaGCCCg----CCGCGGuCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 18658 0.66 0.527863
Target:  5'- aGGuCUCGGGCgGGCcCCAGCgggCGaagGGGCc -3'
miRNA:   3'- -UC-GAGCCCG-CCGcGGUCGa--GUg--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 97371 0.66 0.527863
Target:  5'- cGGCcCGGGCGuGuCGCCgcgcGGCUuucgcgccugcCGCGGGCu -3'
miRNA:   3'- -UCGaGCCCGC-C-GCGG----UCGA-----------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 59793 0.66 0.527863
Target:  5'- cGGCggCGGGCGGCagGCCGGCgUgGCGccGCg -3'
miRNA:   3'- -UCGa-GCCCGCCG--CGGUCG-AgUGCc-UG- -5'
23663 3' -63.4 NC_005261.1 + 126957 0.66 0.527863
Target:  5'- gGGCgCGGG-GGCGgCAGCgcgaaccgCGCGGGg -3'
miRNA:   3'- -UCGaGCCCgCCGCgGUCGa-------GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 136559 0.66 0.527863
Target:  5'- uGGUggGGGCagaaGGCGCgGGUggGCGGGCg -3'
miRNA:   3'- -UCGagCCCG----CCGCGgUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 94308 0.66 0.527863
Target:  5'- cGGCgacccaGGGgGGCGCCAGCccgaacUCGCGccgguaGGCg -3'
miRNA:   3'- -UCGag----CCCgCCGCGGUCG------AGUGC------CUG- -5'
23663 3' -63.4 NC_005261.1 + 29235 0.66 0.527863
Target:  5'- aGGCUaCGccGCGGCGCCGcGCg-ACGGGCc -3'
miRNA:   3'- -UCGA-GCc-CGCCGCGGU-CGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 48418 0.66 0.527863
Target:  5'- uGGCUCaucagcaGGCGGUa-CAGCUCGCGGuGCg -3'
miRNA:   3'- -UCGAGc------CCGCCGcgGUCGAGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 62304 0.66 0.527863
Target:  5'- cGCgCGGGCGcGCGgCGGCccCGCGGuCc -3'
miRNA:   3'- uCGaGCCCGC-CGCgGUCGa-GUGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.