Results 61 - 80 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23663 | 3' | -63.4 | NC_005261.1 | + | 42694 | 0.67 | 0.49962 |
Target: 5'- cAGC-CGcGCGGcCGCCAGCUgC-CGGAUc -3' miRNA: 3'- -UCGaGCcCGCC-GCGGUCGA-GuGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 125699 | 0.67 | 0.49962 |
Target: 5'- gGGCUUGGccCGGCGaCGGCcgcCGCGGGCu -3' miRNA: 3'- -UCGAGCCc-GCCGCgGUCGa--GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 81182 | 0.67 | 0.49962 |
Target: 5'- gAGCUCGuacuCGGgGCaCGGCcgCGCGGGCg -3' miRNA: 3'- -UCGAGCcc--GCCgCG-GUCGa-GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 46379 | 0.67 | 0.49962 |
Target: 5'- uGCUCGcucuCGGCGCCGGCcccgUCGCcGACg -3' miRNA: 3'- uCGAGCcc--GCCGCGGUCG----AGUGcCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 105159 | 0.67 | 0.496832 |
Target: 5'- cGGCUCgaGGGCGGCGuCCAcggggcccgccgccGC-CGCGG-Ca -3' miRNA: 3'- -UCGAG--CCCGCCGC-GGU--------------CGaGUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 125804 | 0.67 | 0.490353 |
Target: 5'- gGGCUUGGGcCGGgGCCgccgcgAGCggggC-CGGACc -3' miRNA: 3'- -UCGAGCCC-GCCgCGG------UCGa---GuGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 18782 | 0.67 | 0.490353 |
Target: 5'- cAGCagCGGcGagGGUGCCGGCUUgagcggcgGCGGGCa -3' miRNA: 3'- -UCGa-GCC-Cg-CCGCGGUCGAG--------UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 92135 | 0.67 | 0.490353 |
Target: 5'- uAGCUCGGGCuGgGCCAGgaCcuCGG-Cg -3' miRNA: 3'- -UCGAGCCCGcCgCGGUCgaGu-GCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 21697 | 0.67 | 0.490353 |
Target: 5'- cGCgucgCGGGCGaGCGCU---UCACGGAg -3' miRNA: 3'- uCGa---GCCCGC-CGCGGucgAGUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 133368 | 0.67 | 0.490353 |
Target: 5'- gGGCUUcGGCugccuGCGCgCGGCcCACGGGCg -3' miRNA: 3'- -UCGAGcCCGc----CGCG-GUCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 130238 | 0.67 | 0.490353 |
Target: 5'- cGCUCaGGCGccGCGCCAGCggcucgUACugcgGGGCg -3' miRNA: 3'- uCGAGcCCGC--CGCGGUCGa-----GUG----CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 43196 | 0.67 | 0.490353 |
Target: 5'- aGGCa-GaGGUGGUG-CGGCUCGCGGAg -3' miRNA: 3'- -UCGagC-CCGCCGCgGUCGAGUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 47700 | 0.67 | 0.489431 |
Target: 5'- cGGCgccgCGucGGCGGCGUCGGgggccucCUCGgCGGACa -3' miRNA: 3'- -UCGa---GC--CCGCCGCGGUC-------GAGU-GCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 1419 | 0.67 | 0.481168 |
Target: 5'- cGGCggGGGCGGCGCCcGcCUCcagcaccaGCGGcgGCg -3' miRNA: 3'- -UCGagCCCGCCGCGGuC-GAG--------UGCC--UG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 58893 | 0.67 | 0.481168 |
Target: 5'- gGGcCUCGcaGGCGcGCGCCAGCgCGCGcACc -3' miRNA: 3'- -UC-GAGC--CCGC-CGCGGUCGaGUGCcUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 34927 | 0.67 | 0.481168 |
Target: 5'- cGGCcacgCGGGgGGCgGCCGGCgcgaCcCGGGCc -3' miRNA: 3'- -UCGa---GCCCgCCG-CGGUCGa---GuGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 87484 | 0.67 | 0.481168 |
Target: 5'- aGGUUCGGcGCGGCcguGCUGGCgCGCaGGCg -3' miRNA: 3'- -UCGAGCC-CGCCG---CGGUCGaGUGcCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 12301 | 0.67 | 0.481168 |
Target: 5'- cGCcgCGGGCacgGGCGCgUAGCcgGCGGGCg -3' miRNA: 3'- uCGa-GCCCG---CCGCG-GUCGagUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 40679 | 0.67 | 0.481168 |
Target: 5'- cGCcgUCGGGgagcCGGCGCCGGC---CGGGCu -3' miRNA: 3'- uCG--AGCCC----GCCGCGGUCGaguGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 95640 | 0.67 | 0.481168 |
Target: 5'- cGGCUgGGcgagcgcgacgcGCGGCGCC-GCg-ACGGGCg -3' miRNA: 3'- -UCGAgCC------------CGCCGCGGuCGagUGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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