miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 134948 0.67 0.472067
Target:  5'- gAGCcgaUGGGCgagGGCGCCGGCgaCGCaGACg -3'
miRNA:   3'- -UCGa--GCCCG---CCGCGGUCGa-GUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 125530 0.67 0.472067
Target:  5'- cGCUCgcgccgcccgcaGGGCGGCGCCAGaggcCUUACGc-- -3'
miRNA:   3'- uCGAG------------CCCGCCGCGGUC----GAGUGCcug -5'
23663 3' -63.4 NC_005261.1 + 98051 0.67 0.472067
Target:  5'- cGGCcgCGGGCGGCG--GGaC-CGCGGGCg -3'
miRNA:   3'- -UCGa-GCCCGCCGCggUC-GaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 16406 0.67 0.463054
Target:  5'- cGC-CGGGCGGUGCgGGagaggccccCUCgacgGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGCGgUC---------GAG----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 43772 0.67 0.463054
Target:  5'- uGCUCgugGGGCGGCGCgCGGagggcgcCGCGGGu -3'
miRNA:   3'- uCGAG---CCCGCCGCG-GUCga-----GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 56149 0.67 0.463054
Target:  5'- gGGCcgaGGGUGGCGgCAGCg-GCGGGg -3'
miRNA:   3'- -UCGag-CCCGCCGCgGUCGagUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 13068 0.67 0.463054
Target:  5'- uGC-CGGGCGcgucCGCCGGCccgUCGgCGGGCg -3'
miRNA:   3'- uCGaGCCCGCc---GCGGUCG---AGU-GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 59724 0.67 0.463054
Target:  5'- cGC-CGGGCGGCaGCggCGGCgCGCGGcCg -3'
miRNA:   3'- uCGaGCCCGCCG-CG--GUCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 127845 0.67 0.463054
Target:  5'- cAGCggacggggCGGucGCGGCGCCAGggCACGaGCg -3'
miRNA:   3'- -UCGa-------GCC--CGCCGCGGUCgaGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 109195 0.67 0.463054
Target:  5'- cGCgUCGGGCGuGCGCaGGCgcucguaggCGCGGcACg -3'
miRNA:   3'- uCG-AGCCCGC-CGCGgUCGa--------GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 68109 0.67 0.463054
Target:  5'- aAGUUCGGGCuggagcuGCGCgGGC-CGCGGcGCg -3'
miRNA:   3'- -UCGAGCCCGc------CGCGgUCGaGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 52671 0.67 0.463054
Target:  5'- cGCacuUCGaGCGG-GCCcuGCUCGCGGGCg -3'
miRNA:   3'- uCG---AGCcCGCCgCGGu-CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29344 0.67 0.463054
Target:  5'- cGCUUcGGCGGCGCgGGCgacacUCGCgaGGGCc -3'
miRNA:   3'- uCGAGcCCGCCGCGgUCG-----AGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 118922 0.67 0.454132
Target:  5'- cGGCgccgCGGGCgcGGCGCCgcgcGGCUggcCGCGGcGCa -3'
miRNA:   3'- -UCGa---GCCCG--CCGCGG----UCGA---GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 81449 0.67 0.454132
Target:  5'- cGCggCGGGCGcCGCCAGCagCA-GGGCc -3'
miRNA:   3'- uCGa-GCCCGCcGCGGUCGa-GUgCCUG- -5'
23663 3' -63.4 NC_005261.1 + 59105 0.67 0.454132
Target:  5'- cGCUCGcaGGCGcGCGCgAGCUCccCGGcCa -3'
miRNA:   3'- uCGAGC--CCGC-CGCGgUCGAGu-GCCuG- -5'
23663 3' -63.4 NC_005261.1 + 81760 0.67 0.454132
Target:  5'- cGCgaagaCGGcGCGG-GCCaggacgAGCUCGCGGAUa -3'
miRNA:   3'- uCGa----GCC-CGCCgCGG------UCGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 98196 0.67 0.454132
Target:  5'- gGGCgcggCGGGCagcgGGCGCCgccacggcAGCgcgGCGGGCa -3'
miRNA:   3'- -UCGa---GCCCG----CCGCGG--------UCGag-UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 37276 0.67 0.454132
Target:  5'- gAGC-CGugccGCGGCGaCCuguuGCUCGCGGAUc -3'
miRNA:   3'- -UCGaGCc---CGCCGC-GGu---CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 37746 0.67 0.453245
Target:  5'- cGCcccccgCGGGCGccgcgccgcccaaGCGCCGGCgccccaACGGACu -3'
miRNA:   3'- uCGa-----GCCCGC-------------CGCGGUCGag----UGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.