miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 95 0.67 0.503348
Target:  5'- gGGCgcgccccCGGGCcccgccgcccgcgccGGCGCCGccccugguGCUCGCGGGg -3'
miRNA:   3'- -UCGa------GCCCG---------------CCGCGGU--------CGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 191 0.7 0.323449
Target:  5'- uGCUCccgGGGCcagcGGUGCCGccgccgccccugguGCUCGCGGGCc -3'
miRNA:   3'- uCGAG---CCCG----CCGCGGU--------------CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1042 0.71 0.29136
Target:  5'- gGGCggCGGGCGGCGgCguuAGCggCGCGGGg -3'
miRNA:   3'- -UCGa-GCCCGCCGCgG---UCGa-GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 1083 0.71 0.271592
Target:  5'- cGCUCcaGGGCGaGC-CCGGCUCgucguccgaggacGCGGACg -3'
miRNA:   3'- uCGAG--CCCGC-CGcGGUCGAG-------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1186 0.68 0.402665
Target:  5'- cGGC-CGGGgcCGGgGCCgGGCgcggCGCGGACc -3'
miRNA:   3'- -UCGaGCCC--GCCgCGG-UCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1419 0.67 0.481168
Target:  5'- cGGCggGGGCGGCGCCcGcCUCcagcaccaGCGGcgGCg -3'
miRNA:   3'- -UCGagCCCGCCGCGGuC-GAG--------UGCC--UG- -5'
23663 3' -63.4 NC_005261.1 + 1513 0.69 0.386348
Target:  5'- cAGCUCGucgGGCGCCAGCUCcaGCGcGCg -3'
miRNA:   3'- -UCGAGCccgCCGCGGUCGAG--UGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 1910 0.66 0.55571
Target:  5'- cGCUCaGGccagcgcGCGGCGCaCuGCgcCGCGGGCa -3'
miRNA:   3'- uCGAG-CC-------CGCCGCG-GuCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 1983 0.75 0.149862
Target:  5'- cGGC-CGGGCcaucGGCgGCCAGUUCGCGGGg -3'
miRNA:   3'- -UCGaGCCCG----CCG-CGGUCGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 2279 0.72 0.226098
Target:  5'- cGC-CGGGCGGCGCCgccAGCgccucCcCGGGCa -3'
miRNA:   3'- uCGaGCCCGCCGCGG---UCGa----GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2525 0.69 0.3658
Target:  5'- -cCUCgGGGCGGCaguaggccGCCAGCgccgcggcgcugggCGCGGGCg -3'
miRNA:   3'- ucGAG-CCCGCCG--------CGGUCGa-------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2624 0.73 0.191343
Target:  5'- cGC-CGGGCGGCauggggcCCAGCaCGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGc------GGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2814 0.73 0.220823
Target:  5'- gGGC-CGGGCGGCcCCAGCccgagCuCGGGCg -3'
miRNA:   3'- -UCGaGCCCGCCGcGGUCGa----GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 2983 0.73 0.197897
Target:  5'- aGGCUgGGGCucggccuggcggcccGGCGCCggGGCUCccGCGGGCc -3'
miRNA:   3'- -UCGAgCCCG---------------CCGCGG--UCGAG--UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 3425 0.66 0.556678
Target:  5'- gAGCgcgCGGGCcaGCGuCCAgGCgggcgCGCGGGCc -3'
miRNA:   3'- -UCGa--GCCCGc-CGC-GGU-CGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 3551 0.67 0.453245
Target:  5'- cAGCgcggCGGGCgcGGCGCCGcuaaggcgcgcgcGCUCcaccgcgucGCGGGCc -3'
miRNA:   3'- -UCGa---GCCCG--CCGCGGU-------------CGAG---------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 3839 0.74 0.182311
Target:  5'- gGGCgcuggCGGcaGCGGCGCCGGCgccgCGCGGcCg -3'
miRNA:   3'- -UCGa----GCC--CGCCGCGGUCGa---GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 3890 0.68 0.402665
Target:  5'- cAGCUCGGcgagcGCGGCGCgGGCgccCGCGccgccGGCg -3'
miRNA:   3'- -UCGAGCC-----CGCCGCGgUCGa--GUGC-----CUG- -5'
23663 3' -63.4 NC_005261.1 + 4397 0.73 0.205626
Target:  5'- cGGC-CGGGCGGCGgCGGCgcgCugcCGGGCc -3'
miRNA:   3'- -UCGaGCCCGCCGCgGUCGa--Gu--GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 4471 0.68 0.419411
Target:  5'- cGGCccgUCGcGCGGCGCCgcGGCguagccugCGCGGGCc -3'
miRNA:   3'- -UCG---AGCcCGCCGCGG--UCGa-------GUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.