miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 5123 0.72 0.248271
Target:  5'- cGGCgCGGGCGGCccGCCGGCgcUCGCGcGCc -3'
miRNA:   3'- -UCGaGCCCGCCG--CGGUCG--AGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 5337 0.68 0.419411
Target:  5'- aGGCgCGGGuCGGCcaGCCGGCUggucgguggaUACGGAg -3'
miRNA:   3'- -UCGaGCCC-GCCG--CGGUCGA----------GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 5548 0.69 0.386348
Target:  5'- cAGCgagaCGGGgGGCGCCcgAGCg-GCGGAg -3'
miRNA:   3'- -UCGa---GCCCgCCGCGG--UCGagUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 5814 0.68 0.419411
Target:  5'- aAGCUCGGcaGCGGCggccgaugcgcGCCGGgUUACGG-Cg -3'
miRNA:   3'- -UCGAGCC--CGCCG-----------CGGUCgAGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 5904 0.7 0.325585
Target:  5'- uAGCUCGGcCGGCcggcugGCUAGCUCGCucGACg -3'
miRNA:   3'- -UCGAGCCcGCCG------CGGUCGAGUGc-CUG- -5'
23663 3' -63.4 NC_005261.1 + 9640 0.69 0.347512
Target:  5'- gGGCUgggUGGGCGGgGCCcaCUCggGCGGGCg -3'
miRNA:   3'- -UCGA---GCCCGCCgCGGucGAG--UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 10033 0.69 0.362706
Target:  5'- cGCgUCGGG-GGCGCUcGCUCACcGGCc -3'
miRNA:   3'- uCG-AGCCCgCCGCGGuCGAGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 11483 0.7 0.340087
Target:  5'- gGGCggggCGGG-GGUGCCGGCUCGa-GGCu -3'
miRNA:   3'- -UCGa---GCCCgCCGCGGUCGAGUgcCUG- -5'
23663 3' -63.4 NC_005261.1 + 12096 0.77 0.116722
Target:  5'- cGGCUCaaaGGcGCGGCGCCAGCUCuagcgccaGGAUg -3'
miRNA:   3'- -UCGAG---CC-CGCCGCGGUCGAGug------CCUG- -5'
23663 3' -63.4 NC_005261.1 + 12301 0.67 0.481168
Target:  5'- cGCcgCGGGCacgGGCGCgUAGCcgGCGGGCg -3'
miRNA:   3'- uCGa-GCCCG---CCGCG-GUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 12717 0.72 0.248271
Target:  5'- cGGCUCGGGCGcGCgggcccGCCGGCcCccuggGCGGGCc -3'
miRNA:   3'- -UCGAGCCCGC-CG------CGGUCGaG-----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 13068 0.67 0.463054
Target:  5'- uGC-CGGGCGcgucCGCCGGCccgUCGgCGGGCg -3'
miRNA:   3'- uCGaGCCCGCc---GCGGUCG---AGU-GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 13108 0.78 0.095269
Target:  5'- cGGCUCGGG-GGCGUCGGCggcCGCGGGg -3'
miRNA:   3'- -UCGAGCCCgCCGCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 13362 0.69 0.386348
Target:  5'- aGGCU-GGGCGGCaccgcucguacaGCCGGCUguaCGCGGuCu -3'
miRNA:   3'- -UCGAgCCCGCCG------------CGGUCGA---GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 13670 0.69 0.378355
Target:  5'- cGCggGGGgGGCGCgGgGCgCGCGGGCg -3'
miRNA:   3'- uCGagCCCgCCGCGgU-CGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 14124 0.76 0.125873
Target:  5'- cGGCUCGGGCGGUggGCagucGCUCGCgaGGACg -3'
miRNA:   3'- -UCGAGCCCGCCG--CGgu--CGAGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 15433 0.68 0.436573
Target:  5'- cGGC-CGGGCGcGgGCCGGCg-AUGGAg -3'
miRNA:   3'- -UCGaGCCCGC-CgCGGUCGagUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 16406 0.67 0.463054
Target:  5'- cGC-CGGGCGGUGCgGGagaggccccCUCgacgGCGGGCg -3'
miRNA:   3'- uCGaGCCCGCCGCGgUC---------GAG----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 17192 0.7 0.297973
Target:  5'- uGC-CGcGGCGGCGagCAGCgcgcccagCACGGACa -3'
miRNA:   3'- uCGaGC-CCGCCGCg-GUCGa-------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 17731 0.7 0.304702
Target:  5'- --aUCGGaGCGGCGCUcggAGCggGCGGACu -3'
miRNA:   3'- ucgAGCC-CGCCGCGG---UCGagUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.