miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 18658 0.66 0.527863
Target:  5'- aGGuCUCGGGCgGGCcCCAGCgggCGaagGGGCc -3'
miRNA:   3'- -UC-GAGCCCG-CCGcGGUCGa--GUg--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 18782 0.67 0.490353
Target:  5'- cAGCagCGGcGagGGUGCCGGCUUgagcggcgGCGGGCa -3'
miRNA:   3'- -UCGa-GCC-Cg-CCGCGGUCGAG--------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 19067 0.67 0.445304
Target:  5'- gGGCUgCGcGGCucucGGCGCguGCUUGCGuGGCg -3'
miRNA:   3'- -UCGA-GC-CCG----CCGCGguCGAGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 20149 0.69 0.362706
Target:  5'- cGCUCaGGCcGCGCCGGCUCucugcuCGG-Cu -3'
miRNA:   3'- uCGAGcCCGcCGCGGUCGAGu-----GCCuG- -5'
23663 3' -63.4 NC_005261.1 + 20559 0.74 0.177937
Target:  5'- uGGCggCGGGCugcgcagcGGCGCCGGCggCGCGGGu -3'
miRNA:   3'- -UCGa-GCCCG--------CCGCGGUCGa-GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 20870 0.68 0.394452
Target:  5'- cGCcgCGGGcCGGCcaucGCCAGCUCGUGGcCg -3'
miRNA:   3'- uCGa-GCCC-GCCG----CGGUCGAGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 21619 0.66 0.556678
Target:  5'- gAGCuUCGGGCGaGgGUCcccGCcccggCGCGGACg -3'
miRNA:   3'- -UCG-AGCCCGC-CgCGGu--CGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 21697 0.67 0.490353
Target:  5'- cGCgucgCGGGCGaGCGCU---UCACGGAg -3'
miRNA:   3'- uCGa---GCCCGC-CGCGGucgAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 21770 0.68 0.419411
Target:  5'- cGC-CGGGCGaGcCGCC-GCggCGCGGGCc -3'
miRNA:   3'- uCGaGCCCGC-C-GCGGuCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 21824 0.68 0.419411
Target:  5'- cGCggCGGGC-GCGCguGCggGCGGGCu -3'
miRNA:   3'- uCGa-GCCCGcCGCGguCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 22078 0.69 0.362706
Target:  5'- gGGCUCGaGGgGGCGCC-GCgUggGGGCg -3'
miRNA:   3'- -UCGAGC-CCgCCGCGGuCGaGugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 22662 0.69 0.386348
Target:  5'- cGGCgccUGGGCGGCGCCcgaguGC-CGCcgggGGACg -3'
miRNA:   3'- -UCGa--GCCCGCCGCGGu----CGaGUG----CCUG- -5'
23663 3' -63.4 NC_005261.1 + 22745 0.68 0.436573
Target:  5'- gGGCgcgGGGCGGCGgCGGCcCACgcgucuggGGGCg -3'
miRNA:   3'- -UCGag-CCCGCCGCgGUCGaGUG--------CCUG- -5'
23663 3' -63.4 NC_005261.1 + 23497 0.68 0.410985
Target:  5'- cGCcUGGGCaGGCGCgGGCcCugGGAg -3'
miRNA:   3'- uCGaGCCCG-CCGCGgUCGaGugCCUg -5'
23663 3' -63.4 NC_005261.1 + 23762 0.69 0.347512
Target:  5'- gGGCUugcccCGGGCGG-GCCGGCUagggUGGGCu -3'
miRNA:   3'- -UCGA-----GCCCGCCgCGGUCGAgu--GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 23819 0.69 0.347512
Target:  5'- gGGCUugcccCGGGCGG-GCCGGCUagggUGGGCu -3'
miRNA:   3'- -UCGA-----GCCCGCCgCGGUCGAgu--GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 23876 0.7 0.340087
Target:  5'- gGGCUugcccCGGGCGG-GCCggcuagggugGGCUCGCuGGGCu -3'
miRNA:   3'- -UCGA-----GCCCGCCgCGG----------UCGAGUG-CCUG- -5'
23663 3' -63.4 NC_005261.1 + 24553 0.7 0.297973
Target:  5'- uGGC-CGGGCGGCGCCAGgUCcCa--- -3'
miRNA:   3'- -UCGaGCCCGCCGCGGUCgAGuGccug -5'
23663 3' -63.4 NC_005261.1 + 28262 0.66 0.515546
Target:  5'- uGCUCgGGGgGGCGCUguugccgccgccgcGGC-CGCGGuCg -3'
miRNA:   3'- uCGAG-CCCgCCGCGG--------------UCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 28589 0.7 0.332778
Target:  5'- gAGCgccggCGGGCcgcccGCGCCgAGCUgGCGGAg -3'
miRNA:   3'- -UCGa----GCCCGc----CGCGG-UCGAgUGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.