miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 28764 0.71 0.266058
Target:  5'- cGGC-CGGG-GGCGCCugGGCcgcggCGCGGGCg -3'
miRNA:   3'- -UCGaGCCCgCCGCGG--UCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29133 0.66 0.53741
Target:  5'- cGC-CGGGgGGCGCCccgccggacccGCcCGCGGAUc -3'
miRNA:   3'- uCGaGCCCgCCGCGGu----------CGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29175 0.66 0.547017
Target:  5'- aGGC-CaGGGCccGGCGCCcucgccgcGGCgcccgCGCGGGCg -3'
miRNA:   3'- -UCGaG-CCCG--CCGCGG--------UCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29235 0.66 0.527863
Target:  5'- aGGCUaCGccGCGGCGCCGcGCg-ACGGGCc -3'
miRNA:   3'- -UCGA-GCc-CGCCGCGGU-CGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29344 0.67 0.463054
Target:  5'- cGCUUcGGCGGCGCgGGCgacacUCGCgaGGGCc -3'
miRNA:   3'- uCGAGcCCGCCGCGgUCG-----AGUG--CCUG- -5'
23663 3' -63.4 NC_005261.1 + 29789 0.71 0.266058
Target:  5'- uGGCcuaccCGGaggcCGGCGCCGGCggCGCGGGCg -3'
miRNA:   3'- -UCGa----GCCc---GCCGCGGUCGa-GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 29909 0.69 0.347512
Target:  5'- cAGCgcgCGagcGGCuGCGCgAGCUgGCGGACg -3'
miRNA:   3'- -UCGa--GC---CCGcCGCGgUCGAgUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 30331 0.67 0.49962
Target:  5'- uGC-CGGcGCGGCuggcgGCCGcGCUCGCGGcCc -3'
miRNA:   3'- uCGaGCC-CGCCG-----CGGU-CGAGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 30898 0.66 0.515546
Target:  5'- gAGCUCGGGCuGGgGCCgcccggccccucccGGC-CGCcGGCg -3'
miRNA:   3'- -UCGAGCCCG-CCgCGG--------------UCGaGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 31202 0.69 0.347512
Target:  5'- cGCcccgaGGucGCGGCG-CGGCUCGCGGACc -3'
miRNA:   3'- uCGag---CC--CGCCGCgGUCGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 31347 0.66 0.52501
Target:  5'- cGCUgcGGCGGCGCgUGGCcuggaugucgcagaUCGCGGACc -3'
miRNA:   3'- uCGAgcCCGCCGCG-GUCG--------------AGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 31936 0.66 0.556678
Target:  5'- gGGCUCugccGCGGCGCCAacgugcGCUaCACGGu- -3'
miRNA:   3'- -UCGAGcc--CGCCGCGGU------CGA-GUGCCug -5'
23663 3' -63.4 NC_005261.1 + 32180 0.68 0.427941
Target:  5'- uGGCcugCGGGCGGCGCgCgcuggAGCUgGCGcccGACg -3'
miRNA:   3'- -UCGa--GCCCGCCGCG-G-----UCGAgUGC---CUG- -5'
23663 3' -63.4 NC_005261.1 + 32319 0.69 0.386348
Target:  5'- cGCcgCGGccGCGGCGcCCGGCguggcCugGGACg -3'
miRNA:   3'- uCGa-GCC--CGCCGC-GGUCGa----GugCCUG- -5'
23663 3' -63.4 NC_005261.1 + 32423 0.66 0.558616
Target:  5'- cGGCgaCGGGagccccgccggccugGGCGCCGGCacagucacccccgggCACGGACu -3'
miRNA:   3'- -UCGa-GCCCg--------------CCGCGGUCGa--------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33365 0.69 0.355052
Target:  5'- cGC-CGGGCcGCGCCGgGCU-GCGGGCc -3'
miRNA:   3'- uCGaGCCCGcCGCGGU-CGAgUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33592 0.77 0.113812
Target:  5'- gAGCaccagGGGCGGCGCCGGC--GCGGGCg -3'
miRNA:   3'- -UCGag---CCCGCCGCGGUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33742 0.71 0.284863
Target:  5'- -cCUCGcGCGGCGCCGgggccgggcccGCUCGCGGGg -3'
miRNA:   3'- ucGAGCcCGCCGCGGU-----------CGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 33775 0.66 0.547017
Target:  5'- nGGCcCGcGGCGaGCGCUgGGCcccgCGCGGGCg -3'
miRNA:   3'- -UCGaGC-CCGC-CGCGG-UCGa---GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 33826 0.69 0.378355
Target:  5'- cGGC-CGGGgGGCGCgGGCccccuggCGCuGGGCg -3'
miRNA:   3'- -UCGaGCCCgCCGCGgUCGa------GUG-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.