miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 137874 0.7 0.323449
Target:  5'- uGCUCccgGGGCcagcGGUGCCGccgccgccccugguGCUCGCGGGCc -3'
miRNA:   3'- uCGAG---CCCG----CCGCGGU--------------CGAGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 137778 0.67 0.503348
Target:  5'- gGGCgcgccccCGGGCcccgccgcccgcgccGGCGCCGccccugguGCUCGCGGGg -3'
miRNA:   3'- -UCGa------GCCCG---------------CCGCGGU--------CGAGUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 137042 0.66 0.518379
Target:  5'- cGGUggaGGGCGGacCGUCGGCaggCGCGGAg -3'
miRNA:   3'- -UCGag-CCCGCC--GCGGUCGa--GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 136559 0.66 0.527863
Target:  5'- uGGUggGGGCagaaGGCGCgGGUggGCGGGCg -3'
miRNA:   3'- -UCGagCCCG----CCGCGgUCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 135659 0.68 0.436573
Target:  5'- gGGCgCGGGCGGC-CCucGCUCGaGGAg -3'
miRNA:   3'- -UCGaGCCCGCCGcGGu-CGAGUgCCUg -5'
23663 3' -63.4 NC_005261.1 + 135434 0.69 0.378355
Target:  5'- cGCUCGcacgccgcccaGGCGGCGCgGGCgcuGCGGGa -3'
miRNA:   3'- uCGAGC-----------CCGCCGCGgUCGag-UGCCUg -5'
23663 3' -63.4 NC_005261.1 + 135204 0.67 0.445304
Target:  5'- uGGC-CGaGGCGGCGCagagGGC-CACGGcCg -3'
miRNA:   3'- -UCGaGC-CCGCCGCGg---UCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 134948 0.67 0.472067
Target:  5'- gAGCcgaUGGGCgagGGCGCCGGCgaCGCaGACg -3'
miRNA:   3'- -UCGa--GCCCG---CCGCGGUCGa-GUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 134852 0.66 0.53741
Target:  5'- gAGgaCGGGgacaaGGCGCCcGCgccccCGCGGGCc -3'
miRNA:   3'- -UCgaGCCCg----CCGCGGuCGa----GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 134562 0.75 0.142613
Target:  5'- uGCU-GGGCGGCGCCgcGGCUgCGCaGGGCg -3'
miRNA:   3'- uCGAgCCCGCCGCGG--UCGA-GUG-CCUG- -5'
23663 3' -63.4 NC_005261.1 + 134367 0.7 0.340087
Target:  5'- cGCgggGGGCGGCGCC-GCUgGCGacGGCg -3'
miRNA:   3'- uCGag-CCCGCCGCGGuCGAgUGC--CUG- -5'
23663 3' -63.4 NC_005261.1 + 134203 0.66 0.518379
Target:  5'- cGGCUCGGcgcgcgggucGCGGCgGCCGGCagcgUCgGCGuGGCg -3'
miRNA:   3'- -UCGAGCC----------CGCCG-CGGUCG----AG-UGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 134071 0.66 0.547017
Target:  5'- aAGCUCGcGCGGCucauguGCgAGCUCuCGGcGCg -3'
miRNA:   3'- -UCGAGCcCGCCG------CGgUCGAGuGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 133563 0.68 0.408478
Target:  5'- uGCUCGGGgGGCggacggcuaaccuuGCCGcgcuggcgcuGCUCACGGcCc -3'
miRNA:   3'- uCGAGCCCgCCG--------------CGGU----------CGAGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 133368 0.67 0.490353
Target:  5'- gGGCUUcGGCugccuGCGCgCGGCcCACGGGCg -3'
miRNA:   3'- -UCGAGcCCGc----CGCG-GUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 132900 0.74 0.177937
Target:  5'- gGGCgccgCGGGCGGCGCCgAGCg-GCGG-Cu -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG-UCGagUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 132618 0.66 0.518379
Target:  5'- cGCcaggGGGCgcuGGCGCCgAGgaCGCGGGCg -3'
miRNA:   3'- uCGag--CCCG---CCGCGG-UCgaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 131420 0.66 0.541247
Target:  5'- cGCUgcCGGcaGCGGCGCCGGCgccccCcuugcgccgcgccucGCGGGCg -3'
miRNA:   3'- uCGA--GCC--CGCCGCGGUCGa----G---------------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 130238 0.67 0.490353
Target:  5'- cGCUCaGGCGccGCGCCAGCggcucgUACugcgGGGCg -3'
miRNA:   3'- uCGAGcCCGC--CGCGGUCGa-----GUG----CCUG- -5'
23663 3' -63.4 NC_005261.1 + 128070 0.68 0.402665
Target:  5'- uGGCgggCGGGCGGgcgaGCgAGCggguuaACGGGCg -3'
miRNA:   3'- -UCGa--GCCCGCCg---CGgUCGag----UGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.