miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 127921 0.69 0.362706
Target:  5'- gGGCUCGGGCccgcucgaugcGGCGCaCAGCUCuuCGuAUa -3'
miRNA:   3'- -UCGAGCCCG-----------CCGCG-GUCGAGu-GCcUG- -5'
23663 3' -63.4 NC_005261.1 + 127845 0.67 0.463054
Target:  5'- cAGCggacggggCGGucGCGGCGCCAGggCACGaGCg -3'
miRNA:   3'- -UCGa-------GCC--CGCCGCGGUCgaGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 127793 0.73 0.215654
Target:  5'- gAGCggCGGGcCGGCGCCgcGGCg-GCGGGCc -3'
miRNA:   3'- -UCGa-GCCC-GCCGCGG--UCGagUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 126957 0.66 0.527863
Target:  5'- gGGCgCGGG-GGCGgCAGCgcgaaccgCGCGGGg -3'
miRNA:   3'- -UCGaGCCCgCCGCgGUCGa-------GUGCCUg -5'
23663 3' -63.4 NC_005261.1 + 125804 0.67 0.490353
Target:  5'- gGGCUUGGGcCGGgGCCgccgcgAGCggggC-CGGACc -3'
miRNA:   3'- -UCGAGCCC-GCCgCGG------UCGa---GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 125730 0.67 0.503348
Target:  5'- cGGCUgGGGCcgccgcaagggggccGGgGCCagGGCUgcCGCGGGCu -3'
miRNA:   3'- -UCGAgCCCG---------------CCgCGG--UCGA--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 125699 0.67 0.49962
Target:  5'- gGGCUUGGccCGGCGaCGGCcgcCGCGGGCu -3'
miRNA:   3'- -UCGAGCCc-GCCGCgGUCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 125530 0.67 0.472067
Target:  5'- cGCUCgcgccgcccgcaGGGCGGCGCCAGaggcCUUACGc-- -3'
miRNA:   3'- uCGAG------------CCCGCCGCGGUC----GAGUGCcug -5'
23663 3' -63.4 NC_005261.1 + 125412 0.66 0.547017
Target:  5'- gAGCggcgCGGGCGGCGCUcaGGC-CGCc--- -3'
miRNA:   3'- -UCGa---GCCCGCCGCGG--UCGaGUGccug -5'
23663 3' -63.4 NC_005261.1 + 125121 0.69 0.355052
Target:  5'- cGCUCGGGUGGUGCgucuguguccaUAGCaUCGCcGGCg -3'
miRNA:   3'- uCGAGCCCGCCGCG-----------GUCG-AGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 123144 0.72 0.233661
Target:  5'- cGGCUauauaggcauacgaGGGCGGgGCgGGCgCGCGGGCg -3'
miRNA:   3'- -UCGAg-------------CCCGCCgCGgUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 122348 0.73 0.215654
Target:  5'- gAGCUCGccuGGCGGC-CgCGGCUCGCGcGGCc -3'
miRNA:   3'- -UCGAGC---CCGCCGcG-GUCGAGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 121633 0.76 0.129069
Target:  5'- cGCUC-GGCGGCcgccGCCGGCgagCGCGGGCu -3'
miRNA:   3'- uCGAGcCCGCCG----CGGUCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 120631 0.66 0.547017
Target:  5'- uGCUgGuGGCGGCccuguGCCuGCggcgcaaggCGCGGGCg -3'
miRNA:   3'- uCGAgC-CCGCCG-----CGGuCGa--------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 120429 0.66 0.53741
Target:  5'- gGGCUggugaacaugCGcGGCGuGCGCCuGCUCuccgcgauagACGGGCc -3'
miRNA:   3'- -UCGA----------GC-CCGC-CGCGGuCGAG----------UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 119995 0.66 0.518379
Target:  5'- cGCU-GGaG-GGCGCCGGCUaCGCGGcCg -3'
miRNA:   3'- uCGAgCC-CgCCGCGGUCGA-GUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 118922 0.67 0.454132
Target:  5'- cGGCgccgCGGGCgcGGCGCCgcgcGGCUggcCGCGGcGCa -3'
miRNA:   3'- -UCGa---GCCCG--CCGCGG----UCGA---GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 118852 0.66 0.538369
Target:  5'- cGCggaGGGCGGCGCgcccgCGGCccuggccucggccacCGCGGGCg -3'
miRNA:   3'- uCGag-CCCGCCGCG-----GUCGa--------------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118724 0.66 0.556678
Target:  5'- cGCgggCGGGCacGGCGUCGcGCUCGCcGAg -3'
miRNA:   3'- uCGa--GCCCG--CCGCGGU-CGAGUGcCUg -5'
23663 3' -63.4 NC_005261.1 + 118666 0.67 0.445304
Target:  5'- cGCUCgGGGCugagggcggcgGGCGCUGGCgcaCGCGcGGCg -3'
miRNA:   3'- uCGAG-CCCG-----------CCGCGGUCGa--GUGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.