miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 3' -63.4 NC_005261.1 + 118634 0.66 0.556678
Target:  5'- cGC-CGcGGCGGCGCUcugGGCcC-CGGGCc -3'
miRNA:   3'- uCGaGC-CCGCCGCGG---UCGaGuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118374 0.73 0.191343
Target:  5'- cGCUgGGGCgcgcggcccgaGGCGCUGGCggcCGCGGGCg -3'
miRNA:   3'- uCGAgCCCG-----------CCGCGGUCGa--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 118128 0.68 0.427941
Target:  5'- cGGCUCGcGCcGCucgGCCGGCUCGCGcaGACg -3'
miRNA:   3'- -UCGAGCcCGcCG---CGGUCGAGUGC--CUG- -5'
23663 3' -63.4 NC_005261.1 + 117959 0.67 0.445304
Target:  5'- uGCUaCGGGC-GCGCUcGCUgcCAUGGGCg -3'
miRNA:   3'- uCGA-GCCCGcCGCGGuCGA--GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 117682 0.67 0.448824
Target:  5'- cGGC-CGGGCccgcGGCgaggccggcccugagGCCGGCgCGCGGGCc -3'
miRNA:   3'- -UCGaGCCCG----CCG---------------CGGUCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 116671 0.68 0.427941
Target:  5'- uGCUCc-GCGGCGCCGGCccaaUCGCGaGCg -3'
miRNA:   3'- uCGAGccCGCCGCGGUCG----AGUGCcUG- -5'
23663 3' -63.4 NC_005261.1 + 116479 0.71 0.272212
Target:  5'- cGGCgCGGGCGGgGCgGGCgCGCGGuAUa -3'
miRNA:   3'- -UCGaGCCCGCCgCGgUCGaGUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 115836 0.68 0.419411
Target:  5'- cAGCUUGGGC-GCGUUGGCcCGCGcGGCc -3'
miRNA:   3'- -UCGAGCCCGcCGCGGUCGaGUGC-CUG- -5'
23663 3' -63.4 NC_005261.1 + 114343 0.7 0.311547
Target:  5'- uGGCUCGaGCGGCGCgUGGC-CGCGGcCg -3'
miRNA:   3'- -UCGAGCcCGCCGCG-GUCGaGUGCCuG- -5'
23663 3' -63.4 NC_005261.1 + 113043 0.68 0.436573
Target:  5'- cGCgcgCGGcGUGGCgcGCCAccGCUCGCuGGGCa -3'
miRNA:   3'- uCGa--GCC-CGCCG--CGGU--CGAGUG-CCUG- -5'
23663 3' -63.4 NC_005261.1 + 111974 0.66 0.53741
Target:  5'- aAGCUCGaaGGCggGGCGCUggAGUcCAUGGGCc -3'
miRNA:   3'- -UCGAGC--CCG--CCGCGG--UCGaGUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 111407 0.69 0.347512
Target:  5'- uAGCggaCGGGCGGgccacaCGCCGGCgggCaagagACGGACg -3'
miRNA:   3'- -UCGa--GCCCGCC------GCGGUCGa--G-----UGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 110237 0.71 0.272212
Target:  5'- cAGCgugggCGGcGCGGCGCCcggggGGCU-GCGGGCc -3'
miRNA:   3'- -UCGa----GCC-CGCCGCGG-----UCGAgUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 109879 0.66 0.518379
Target:  5'- gGGCccgCGGGCgGGCGCCccggGGCUaCAgccccUGGACc -3'
miRNA:   3'- -UCGa--GCCCG-CCGCGG----UCGA-GU-----GCCUG- -5'
23663 3' -63.4 NC_005261.1 + 109195 0.67 0.463054
Target:  5'- cGCgUCGGGCGuGCGCaGGCgcucguaggCGCGGcACg -3'
miRNA:   3'- uCG-AGCCCGC-CGCGgUCGa--------GUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 108689 0.68 0.433973
Target:  5'- cGGCUCGGGgaaguacucgucgaCGaGCGCCacGGCgaagagcgCGCGGGCc -3'
miRNA:   3'- -UCGAGCCC--------------GC-CGCGG--UCGa-------GUGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 108191 0.68 0.394452
Target:  5'- cGGCUcCGGGCGcgagagcuGCGCCAGC--ACGGcGCg -3'
miRNA:   3'- -UCGA-GCCCGC--------CGCGGUCGagUGCC-UG- -5'
23663 3' -63.4 NC_005261.1 + 107744 0.68 0.436573
Target:  5'- cGGCcgCGGGgGGgGCCAcgccccagcGCUCGCuGGCg -3'
miRNA:   3'- -UCGa-GCCCgCCgCGGU---------CGAGUGcCUG- -5'
23663 3' -63.4 NC_005261.1 + 105269 0.74 0.165373
Target:  5'- aGGCUcggCGGGCGGCagcGCCGGCgagCcCGGGCg -3'
miRNA:   3'- -UCGA---GCCCGCCG---CGGUCGa--GuGCCUG- -5'
23663 3' -63.4 NC_005261.1 + 105159 0.67 0.496832
Target:  5'- cGGCUCgaGGGCGGCGuCCAcggggcccgccgccGC-CGCGG-Ca -3'
miRNA:   3'- -UCGAG--CCCGCCGC-GGU--------------CGaGUGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.