Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23663 | 3' | -63.4 | NC_005261.1 | + | 58304 | 0.66 | 0.560556 |
Target: 5'- gGGCgcggggaggGGGCGGC-CCAGCcgcccgagcaccgccUCGCGGAg -3' miRNA: 3'- -UCGag-------CCCGCCGcGGUCG---------------AGUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 14124 | 0.76 | 0.125873 |
Target: 5'- cGGCUCGGGCGGUggGCagucGCUCGCgaGGACg -3' miRNA: 3'- -UCGAGCCCGCCG--CGgu--CGAGUG--CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 121633 | 0.76 | 0.129069 |
Target: 5'- cGCUC-GGCGGCcgccGCCGGCgagCGCGGGCu -3' miRNA: 3'- uCGAGcCCGCCG----CGGUCGa--GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 96862 | 0.76 | 0.132339 |
Target: 5'- gGGCUCGGGgGGCGCgGGUagcgUGCGGAUc -3' miRNA: 3'- -UCGAGCCCgCCGCGgUCGa---GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 97577 | 0.76 | 0.135685 |
Target: 5'- uGGCUC-GGUGGCGCgGGCggaGCGGGCg -3' miRNA: 3'- -UCGAGcCCGCCGCGgUCGag-UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 134562 | 0.75 | 0.142613 |
Target: 5'- uGCU-GGGCGGCGCCgcGGCUgCGCaGGGCg -3' miRNA: 3'- uCGAgCCCGCCGCGG--UCGA-GUG-CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 44021 | 0.75 | 0.142613 |
Target: 5'- cGGCgcggCGGGCGGcCGCCgcgcGGCggcCGCGGGCg -3' miRNA: 3'- -UCGa---GCCCGCC-GCGG----UCGa--GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 88180 | 0.75 | 0.146196 |
Target: 5'- gGGCgacgCcGGCGGCGCCGGCgagGCGGGCc -3' miRNA: 3'- -UCGa---GcCCGCCGCGGUCGag-UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 1983 | 0.75 | 0.149862 |
Target: 5'- cGGC-CGGGCcaucGGCgGCCAGUUCGCGGGg -3' miRNA: 3'- -UCGaGCCCG----CCG-CGGUCGAGUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 97143 | 0.76 | 0.122443 |
Target: 5'- cGCUCGGaggcGCuGGCGCCGGCccggccggcugggUCGCGGGCg -3' miRNA: 3'- uCGAGCC----CG-CCGCGGUCG-------------AGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 92489 | 0.76 | 0.119701 |
Target: 5'- gAGCUCGcGGaCGGCgGCCAGCUCgucaGCGGGg -3' miRNA: 3'- -UCGAGC-CC-GCCG-CGGUCGAG----UGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 12096 | 0.77 | 0.116722 |
Target: 5'- cGGCUCaaaGGcGCGGCGCCAGCUCuagcgccaGGAUg -3' miRNA: 3'- -UCGAG---CC-CGCCGCGGUCGAGug------CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 73363 | 0.84 | 0.035436 |
Target: 5'- cGGCUCaGGCGGCGCCAGCagCGCGGcCa -3' miRNA: 3'- -UCGAGcCCGCCGCGGUCGa-GUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 98493 | 0.83 | 0.043742 |
Target: 5'- gGGCUCGGGCggguaaGGUGCCGGCgUACGGGCa -3' miRNA: 3'- -UCGAGCCCG------CCGCGGUCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 76460 | 0.79 | 0.07368 |
Target: 5'- cGGCgacGGCGGCGCCGGCgcgcgCGCGGACc -3' miRNA: 3'- -UCGagcCCGCCGCGGUCGa----GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 13108 | 0.78 | 0.095269 |
Target: 5'- cGGCUCGGG-GGCGUCGGCggcCGCGGGg -3' miRNA: 3'- -UCGAGCCCgCCGCGGUCGa--GUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 83318 | 0.78 | 0.100254 |
Target: 5'- cAGCUCGGGCGGCGCCAcGC-CGCccGCc -3' miRNA: 3'- -UCGAGCCCGCCGCGGU-CGaGUGccUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 81360 | 0.77 | 0.102838 |
Target: 5'- gGGCUugCGGGgGGCGCCgGGCUCGCuggGGGCg -3' miRNA: 3'- -UCGA--GCCCgCCGCGG-UCGAGUG---CCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 33592 | 0.77 | 0.113812 |
Target: 5'- gAGCaccagGGGCGGCGCCGGC--GCGGGCg -3' miRNA: 3'- -UCGag---CCCGCCGCGGUCGagUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 52972 | 0.77 | 0.113812 |
Target: 5'- cGC-CGGuGCGGCGCCGGCagGCGGGg -3' miRNA: 3'- uCGaGCC-CGCCGCGGUCGagUGCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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