Results 41 - 60 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23663 | 3' | -63.4 | NC_005261.1 | + | 83318 | 0.78 | 0.100254 |
Target: 5'- cAGCUCGGGCGGCGCCAcGC-CGCccGCc -3' miRNA: 3'- -UCGAGCCCGCCGCGGU-CGaGUGccUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 13108 | 0.78 | 0.095269 |
Target: 5'- cGGCUCGGG-GGCGUCGGCggcCGCGGGg -3' miRNA: 3'- -UCGAGCCCgCCGCGGUCGa--GUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 76460 | 0.79 | 0.07368 |
Target: 5'- cGGCgacGGCGGCGCCGGCgcgcgCGCGGACc -3' miRNA: 3'- -UCGagcCCGCCGCGGUCGa----GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 98493 | 0.83 | 0.043742 |
Target: 5'- gGGCUCGGGCggguaaGGUGCCGGCgUACGGGCa -3' miRNA: 3'- -UCGAGCCCG------CCGCGGUCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 73363 | 0.84 | 0.035436 |
Target: 5'- cGGCUCaGGCGGCGCCAGCagCGCGGcCa -3' miRNA: 3'- -UCGAGcCCGCCGCGGUCGa-GUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 96862 | 0.76 | 0.132339 |
Target: 5'- gGGCUCGGGgGGCGCgGGUagcgUGCGGAUc -3' miRNA: 3'- -UCGAGCCCgCCGCGgUCGa---GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 97577 | 0.76 | 0.135685 |
Target: 5'- uGGCUC-GGUGGCGCgGGCggaGCGGGCg -3' miRNA: 3'- -UCGAGcCCGCCGCGgUCGag-UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 92787 | 0.74 | 0.186779 |
Target: 5'- gGGCUCGGGgucggggucCGGuCGCCgGGCgCGCGGGCg -3' miRNA: 3'- -UCGAGCCC---------GCC-GCGG-UCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 55709 | 0.74 | 0.186327 |
Target: 5'- cGCUUGGGCGGCcacGCguGUcucuaugUCGCGGGCg -3' miRNA: 3'- uCGAGCCCGCCG---CGguCG-------AGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 3839 | 0.74 | 0.182311 |
Target: 5'- gGGCgcuggCGGcaGCGGCGCCGGCgccgCGCGGcCg -3' miRNA: 3'- -UCGa----GCC--CGCCGCGGUCGa---GUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 37366 | 0.74 | 0.182311 |
Target: 5'- uGCUCGccgcccgaGGCGGCGCUguGGUaCGCGGACa -3' miRNA: 3'- uCGAGC--------CCGCCGCGG--UCGaGUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 132900 | 0.74 | 0.177937 |
Target: 5'- gGGCgccgCGGGCGGCGCCgAGCg-GCGG-Cu -3' miRNA: 3'- -UCGa---GCCCGCCGCGG-UCGagUGCCuG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 20559 | 0.74 | 0.177937 |
Target: 5'- uGGCggCGGGCugcgcagcGGCGCCGGCggCGCGGGu -3' miRNA: 3'- -UCGa-GCCCG--------CCGCGGUCGa-GUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 98357 | 0.74 | 0.16947 |
Target: 5'- gGGCggGGGUgGGCGCgGGCUCugGCGGGCg -3' miRNA: 3'- -UCGagCCCG-CCGCGgUCGAG--UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 105269 | 0.74 | 0.165373 |
Target: 5'- aGGCUcggCGGGCGGCagcGCCGGCgagCcCGGGCg -3' miRNA: 3'- -UCGA---GCCCGCCG---CGGUCGa--GuGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 70991 | 0.75 | 0.157445 |
Target: 5'- uGGCgcgCGGGCGGCcgccagGCCAGCUCGCcgcgcaGGAa -3' miRNA: 3'- -UCGa--GCCCGCCG------CGGUCGAGUG------CCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 1983 | 0.75 | 0.149862 |
Target: 5'- cGGC-CGGGCcaucGGCgGCCAGUUCGCGGGg -3' miRNA: 3'- -UCGaGCCCG----CCG-CGGUCGAGUGCCUg -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 88180 | 0.75 | 0.146196 |
Target: 5'- gGGCgacgCcGGCGGCGCCGGCgagGCGGGCc -3' miRNA: 3'- -UCGa---GcCCGCCGCGGUCGag-UGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 44021 | 0.75 | 0.142613 |
Target: 5'- cGGCgcggCGGGCGGcCGCCgcgcGGCggcCGCGGGCg -3' miRNA: 3'- -UCGa---GCCCGCC-GCGG----UCGa--GUGCCUG- -5' |
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23663 | 3' | -63.4 | NC_005261.1 | + | 134562 | 0.75 | 0.142613 |
Target: 5'- uGCU-GGGCGGCGCCgcGGCUgCGCaGGGCg -3' miRNA: 3'- uCGAgCCCGCCGCGG--UCGA-GUG-CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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