miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23663 5' -57.6 NC_005261.1 + 23183 0.66 0.8187
Target:  5'- gGGGGCgacagCGAGCGCGcCGCggGGCCc-- -3'
miRNA:   3'- -UCCUGga---GUUCGCGU-GCGa-CCGGuuc -5'
23663 5' -57.6 NC_005261.1 + 31314 0.66 0.8187
Target:  5'- cGGGGCCcgCGGGCGCGCuCgccGCCAGc -3'
miRNA:   3'- -UCCUGGa-GUUCGCGUGcGac-CGGUUc -5'
23663 5' -57.6 NC_005261.1 + 111703 0.66 0.8187
Target:  5'- uGGACCgcaugaAGGCGCAguCGCgGGUCGAc -3'
miRNA:   3'- uCCUGGag----UUCGCGU--GCGaCCGGUUc -5'
23663 5' -57.6 NC_005261.1 + 6405 0.66 0.8187
Target:  5'- -uGACCc---GCGCGCGUUGGCCcGGc -3'
miRNA:   3'- ucCUGGaguuCGCGUGCGACCGGuUC- -5'
23663 5' -57.6 NC_005261.1 + 134912 0.66 0.8187
Target:  5'- cGGGugCgCAAGCGCAaGCUGGagaCCGc- -3'
miRNA:   3'- -UCCugGaGUUCGCGUgCGACC---GGUuc -5'
23663 5' -57.6 NC_005261.1 + 48276 0.66 0.8187
Target:  5'- gGGGACgCgcgCAAGCGC-CGCUuccagcgaGGCCucGGg -3'
miRNA:   3'- -UCCUG-Ga--GUUCGCGuGCGA--------CCGGu-UC- -5'
23663 5' -57.6 NC_005261.1 + 89735 0.66 0.813469
Target:  5'- uGGAUaagCUCAAGCuGCccagcuacaagcugaACGCcgUGGCCGAGg -3'
miRNA:   3'- uCCUG---GAGUUCG-CG---------------UGCG--ACCGGUUC- -5'
23663 5' -57.6 NC_005261.1 + 115340 0.66 0.809947
Target:  5'- cGGGACguguacUUCAuGCGCACGCUGugcGCCu-- -3'
miRNA:   3'- -UCCUG------GAGUuCGCGUGCGAC---CGGuuc -5'
23663 5' -57.6 NC_005261.1 + 33026 0.66 0.809947
Target:  5'- gGGGcGCCgaugCgGAGCGUcCGCggagGGCCAGGa -3'
miRNA:   3'- -UCC-UGGa---G-UUCGCGuGCGa---CCGGUUC- -5'
23663 5' -57.6 NC_005261.1 + 88428 0.66 0.809947
Target:  5'- uGGACUUCGcgGGC-CACcgcuGCUGGCCGc- -3'
miRNA:   3'- uCCUGGAGU--UCGcGUG----CGACCGGUuc -5'
23663 5' -57.6 NC_005261.1 + 59632 0.66 0.809947
Target:  5'- cAGGACCUC--GCGguCGCUGuCCucGAGg -3'
miRNA:   3'- -UCCUGGAGuuCGCguGCGACcGG--UUC- -5'
23663 5' -57.6 NC_005261.1 + 68564 0.66 0.809947
Target:  5'- cGGGCUcuUUGAGCGCGuCGCc-GCCGAGg -3'
miRNA:   3'- uCCUGG--AGUUCGCGU-GCGacCGGUUC- -5'
23663 5' -57.6 NC_005261.1 + 90735 0.66 0.809947
Target:  5'- uGGGccgcGCCUgAGGCGCugGCgcgGGacuuccCCGAGg -3'
miRNA:   3'- -UCC----UGGAgUUCGCGugCGa--CC------GGUUC- -5'
23663 5' -57.6 NC_005261.1 + 20103 0.66 0.809947
Target:  5'- gGGGGCUUCcgcGGCaagGCGCGCgGGCCc-- -3'
miRNA:   3'- -UCCUGGAGu--UCG---CGUGCGaCCGGuuc -5'
23663 5' -57.6 NC_005261.1 + 60831 0.66 0.809063
Target:  5'- cAGGAgaUCAucggcggcggcgaGGuCGCGCGCcgGGCCGAGc -3'
miRNA:   3'- -UCCUggAGU-------------UC-GCGUGCGa-CCGGUUC- -5'
23663 5' -57.6 NC_005261.1 + 74939 0.66 0.809063
Target:  5'- gGGGACUgcggcgCGGGCGCgcucggcGCGCUcgaGGCCGc- -3'
miRNA:   3'- -UCCUGGa-----GUUCGCG-------UGCGA---CCGGUuc -5'
23663 5' -57.6 NC_005261.1 + 31006 0.66 0.80103
Target:  5'- cGGGGCCagGGGCccgGCGCcGGCCAAa -3'
miRNA:   3'- -UCCUGGagUUCGcg-UGCGaCCGGUUc -5'
23663 5' -57.6 NC_005261.1 + 125734 0.66 0.80103
Target:  5'- uGGGGCCgccgCAAGgGgGCcggGGCCAGGg -3'
miRNA:   3'- -UCCUGGa---GUUCgCgUGcgaCCGGUUC- -5'
23663 5' -57.6 NC_005261.1 + 23675 0.66 0.80103
Target:  5'- cGGGCCggugagCGAGCGCccccgACGCgaGGCCc-- -3'
miRNA:   3'- uCCUGGa-----GUUCGCG-----UGCGa-CCGGuuc -5'
23663 5' -57.6 NC_005261.1 + 92742 0.66 0.80103
Target:  5'- gGGGACagCGAGCGCcgcccGCGCcgcucggaccgGGCCGAGc -3'
miRNA:   3'- -UCCUGgaGUUCGCG-----UGCGa----------CCGGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.