Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23663 | 5' | -57.6 | NC_005261.1 | + | 23183 | 0.66 | 0.8187 |
Target: 5'- gGGGGCgacagCGAGCGCGcCGCggGGCCc-- -3' miRNA: 3'- -UCCUGga---GUUCGCGU-GCGa-CCGGuuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 31314 | 0.66 | 0.8187 |
Target: 5'- cGGGGCCcgCGGGCGCGCuCgccGCCAGc -3' miRNA: 3'- -UCCUGGa-GUUCGCGUGcGac-CGGUUc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 111703 | 0.66 | 0.8187 |
Target: 5'- uGGACCgcaugaAGGCGCAguCGCgGGUCGAc -3' miRNA: 3'- uCCUGGag----UUCGCGU--GCGaCCGGUUc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 6405 | 0.66 | 0.8187 |
Target: 5'- -uGACCc---GCGCGCGUUGGCCcGGc -3' miRNA: 3'- ucCUGGaguuCGCGUGCGACCGGuUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 134912 | 0.66 | 0.8187 |
Target: 5'- cGGGugCgCAAGCGCAaGCUGGagaCCGc- -3' miRNA: 3'- -UCCugGaGUUCGCGUgCGACC---GGUuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 48276 | 0.66 | 0.8187 |
Target: 5'- gGGGACgCgcgCAAGCGC-CGCUuccagcgaGGCCucGGg -3' miRNA: 3'- -UCCUG-Ga--GUUCGCGuGCGA--------CCGGu-UC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 89735 | 0.66 | 0.813469 |
Target: 5'- uGGAUaagCUCAAGCuGCccagcuacaagcugaACGCcgUGGCCGAGg -3' miRNA: 3'- uCCUG---GAGUUCG-CG---------------UGCG--ACCGGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 115340 | 0.66 | 0.809947 |
Target: 5'- cGGGACguguacUUCAuGCGCACGCUGugcGCCu-- -3' miRNA: 3'- -UCCUG------GAGUuCGCGUGCGAC---CGGuuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 33026 | 0.66 | 0.809947 |
Target: 5'- gGGGcGCCgaugCgGAGCGUcCGCggagGGCCAGGa -3' miRNA: 3'- -UCC-UGGa---G-UUCGCGuGCGa---CCGGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 88428 | 0.66 | 0.809947 |
Target: 5'- uGGACUUCGcgGGC-CACcgcuGCUGGCCGc- -3' miRNA: 3'- uCCUGGAGU--UCGcGUG----CGACCGGUuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 59632 | 0.66 | 0.809947 |
Target: 5'- cAGGACCUC--GCGguCGCUGuCCucGAGg -3' miRNA: 3'- -UCCUGGAGuuCGCguGCGACcGG--UUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 68564 | 0.66 | 0.809947 |
Target: 5'- cGGGCUcuUUGAGCGCGuCGCc-GCCGAGg -3' miRNA: 3'- uCCUGG--AGUUCGCGU-GCGacCGGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 90735 | 0.66 | 0.809947 |
Target: 5'- uGGGccgcGCCUgAGGCGCugGCgcgGGacuuccCCGAGg -3' miRNA: 3'- -UCC----UGGAgUUCGCGugCGa--CC------GGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 20103 | 0.66 | 0.809947 |
Target: 5'- gGGGGCUUCcgcGGCaagGCGCGCgGGCCc-- -3' miRNA: 3'- -UCCUGGAGu--UCG---CGUGCGaCCGGuuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 60831 | 0.66 | 0.809063 |
Target: 5'- cAGGAgaUCAucggcggcggcgaGGuCGCGCGCcgGGCCGAGc -3' miRNA: 3'- -UCCUggAGU-------------UC-GCGUGCGa-CCGGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 74939 | 0.66 | 0.809063 |
Target: 5'- gGGGACUgcggcgCGGGCGCgcucggcGCGCUcgaGGCCGc- -3' miRNA: 3'- -UCCUGGa-----GUUCGCG-------UGCGA---CCGGUuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 31006 | 0.66 | 0.80103 |
Target: 5'- cGGGGCCagGGGCccgGCGCcGGCCAAa -3' miRNA: 3'- -UCCUGGagUUCGcg-UGCGaCCGGUUc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 125734 | 0.66 | 0.80103 |
Target: 5'- uGGGGCCgccgCAAGgGgGCcggGGCCAGGg -3' miRNA: 3'- -UCCUGGa---GUUCgCgUGcgaCCGGUUC- -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 23675 | 0.66 | 0.80103 |
Target: 5'- cGGGCCggugagCGAGCGCccccgACGCgaGGCCc-- -3' miRNA: 3'- uCCUGGa-----GUUCGCG-----UGCGa-CCGGuuc -5' |
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23663 | 5' | -57.6 | NC_005261.1 | + | 92742 | 0.66 | 0.80103 |
Target: 5'- gGGGACagCGAGCGCcgcccGCGCcgcucggaccgGGCCGAGc -3' miRNA: 3'- -UCCUGgaGUUCGCG-----UGCGa----------CCGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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