Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23664 | 3' | -54.2 | NC_005261.1 | + | 83293 | 0.68 | 0.85618 |
Target: 5'- cCAGGcACggCUGCGCggGGUCGUGCAGc- -3' miRNA: 3'- -GUCU-UGuaGAUGCG--CCGGCACGUCuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 77751 | 0.68 | 0.848047 |
Target: 5'- gGGAGCccCUACGCaGCCGgggcgGCGGGGa -3' miRNA: 3'- gUCUUGuaGAUGCGcCGGCa----CGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 39880 | 0.68 | 0.848047 |
Target: 5'- cCAGcaGGCcgCgcGCGCGGCUGUGCAGc- -3' miRNA: 3'- -GUC--UUGuaGa-UGCGCCGGCACGUCuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 29916 | 0.68 | 0.83116 |
Target: 5'- -cGAGCggCUGCGCGaGCUG-GCGGAc -3' miRNA: 3'- guCUUGuaGAUGCGC-CGGCaCGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 42635 | 0.69 | 0.822422 |
Target: 5'- gGGGAC-UCggccgcCGCGGCCGcGCGGAAc -3' miRNA: 3'- gUCUUGuAGau----GCGCCGGCaCGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 28790 | 0.69 | 0.813499 |
Target: 5'- -cGGGCG-CU-CGCGGCCGcgGCGGAGg -3' miRNA: 3'- guCUUGUaGAuGCGCCGGCa-CGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 81807 | 0.69 | 0.798859 |
Target: 5'- -cGAGCcgCUGCGCGGCgGUgacgccccgcgccgcGCGGAu -3' miRNA: 3'- guCUUGuaGAUGCGCCGgCA---------------CGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 3652 | 0.69 | 0.776138 |
Target: 5'- cUAGcGCGUCUGgagcgcaggcCGCGGCCG-GCAGGc -3' miRNA: 3'- -GUCuUGUAGAU----------GCGCCGGCaCGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 50934 | 0.7 | 0.726416 |
Target: 5'- gCGGGGCuccccugcuUCUACGCGGCCGUGg---- -3' miRNA: 3'- -GUCUUGu--------AGAUGCGCCGGCACgucuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 44440 | 0.7 | 0.726416 |
Target: 5'- uGGAGCGgcUCU-CGCGGCUGUgggaGCAGGAg -3' miRNA: 3'- gUCUUGU--AGAuGCGCCGGCA----CGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 68856 | 0.71 | 0.695457 |
Target: 5'- gGGGACGcccUCUGcCGCGGCUGUGCGc-- -3' miRNA: 3'- gUCUUGU---AGAU-GCGCCGGCACGUcuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 14973 | 0.71 | 0.695457 |
Target: 5'- uGGGGCGaCUGCGCGGCCGcGCcGGc -3' miRNA: 3'- gUCUUGUaGAUGCGCCGGCaCGuCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 100595 | 0.72 | 0.632269 |
Target: 5'- aGGAGCGccgCcACGCGGCCGcGCAGGu -3' miRNA: 3'- gUCUUGUa--GaUGCGCCGGCaCGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 87471 | 0.73 | 0.558635 |
Target: 5'- gCAGGcgcGCGUCagguucgGCGCGGCCGUGCuGGc -3' miRNA: 3'- -GUCU---UGUAGa------UGCGCCGGCACGuCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 120000 | 0.75 | 0.487607 |
Target: 5'- gAGGGCGccggCUACGCGGCCGUGUg--- -3' miRNA: 3'- gUCUUGUa---GAUGCGCCGGCACGucuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 135267 | 0.79 | 0.291748 |
Target: 5'- -uGGACAUC-AUGCGGCCuGUGCAGAAc -3' miRNA: 3'- guCUUGUAGaUGCGCCGG-CACGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 38121 | 1.06 | 0.004865 |
Target: 5'- cCAGAACAUCUACGCGGCCGUGCAGAAg -3' miRNA: 3'- -GUCUUGUAGAUGCGCCGGCACGUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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