miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 3' -54.2 NC_005261.1 + 68856 0.71 0.695457
Target:  5'- gGGGACGcccUCUGcCGCGGCUGUGCGc-- -3'
miRNA:   3'- gUCUUGU---AGAU-GCGCCGGCACGUcuu -5'
23664 3' -54.2 NC_005261.1 + 77751 0.68 0.848047
Target:  5'- gGGAGCccCUACGCaGCCGgggcgGCGGGGa -3'
miRNA:   3'- gUCUUGuaGAUGCGcCGGCa----CGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 81807 0.69 0.798859
Target:  5'- -cGAGCcgCUGCGCGGCgGUgacgccccgcgccgcGCGGAu -3'
miRNA:   3'- guCUUGuaGAUGCGCCGgCA---------------CGUCUu -5'
23664 3' -54.2 NC_005261.1 + 81903 0.66 0.917162
Target:  5'- --cAGCAUgaACGCGGCCagcuccuccuugagGUGCGGGAg -3'
miRNA:   3'- gucUUGUAgaUGCGCCGG--------------CACGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 83293 0.68 0.85618
Target:  5'- cCAGGcACggCUGCGCggGGUCGUGCAGc- -3'
miRNA:   3'- -GUCU-UGuaGAUGCG--CCGGCACGUCuu -5'
23664 3' -54.2 NC_005261.1 + 87471 0.73 0.558635
Target:  5'- gCAGGcgcGCGUCagguucgGCGCGGCCGUGCuGGc -3'
miRNA:   3'- -GUCU---UGUAGa------UGCGCCGGCACGuCUu -5'
23664 3' -54.2 NC_005261.1 + 91987 0.66 0.912943
Target:  5'- gCAGGugGUCcagcAgGCGGUgGUGCAGGu -3'
miRNA:   3'- -GUCUugUAGa---UgCGCCGgCACGUCUu -5'
23664 3' -54.2 NC_005261.1 + 97752 0.67 0.900207
Target:  5'- gCGGGGCGggcUCggcgGCGCGGCCG-GCAu-- -3'
miRNA:   3'- -GUCUUGU---AGa---UGCGCCGGCaCGUcuu -5'
23664 3' -54.2 NC_005261.1 + 98234 0.66 0.906701
Target:  5'- -cGGGCAUCgauuucCGCGGCCcgGUGCGGc- -3'
miRNA:   3'- guCUUGUAGau----GCGCCGG--CACGUCuu -5'
23664 3' -54.2 NC_005261.1 + 100595 0.72 0.632269
Target:  5'- aGGAGCGccgCcACGCGGCCGcGCAGGu -3'
miRNA:   3'- gUCUUGUa--GaUGCGCCGGCaCGUCUu -5'
23664 3' -54.2 NC_005261.1 + 120000 0.75 0.487607
Target:  5'- gAGGGCGccggCUACGCGGCCGUGUg--- -3'
miRNA:   3'- gUCUUGUa---GAUGCGCCGGCACGucuu -5'
23664 3' -54.2 NC_005261.1 + 121907 0.68 0.85618
Target:  5'- gUAGcuCGUCUGCGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCuuGUAGAUGCGcCGGCACGUcuu -5'
23664 3' -54.2 NC_005261.1 + 123165 0.66 0.924665
Target:  5'- gCGGGGCGggcGCGCGGgCGUGguGGc -3'
miRNA:   3'- -GUCUUGUagaUGCGCCgGCACguCUu -5'
23664 3' -54.2 NC_005261.1 + 127594 0.66 0.930143
Target:  5'- -uGGGCGUCUuCGgGGCCGcGCuGAAc -3'
miRNA:   3'- guCUUGUAGAuGCgCCGGCaCGuCUU- -5'
23664 3' -54.2 NC_005261.1 + 132680 0.67 0.893465
Target:  5'- gAGGACAagaugggcuUCcGCGUGGCCGUGCc--- -3'
miRNA:   3'- gUCUUGU---------AGaUGCGCCGGCACGucuu -5'
23664 3' -54.2 NC_005261.1 + 135267 0.79 0.291748
Target:  5'- -uGGACAUC-AUGCGGCCuGUGCAGAAc -3'
miRNA:   3'- guCUUGUAGaUGCGCCGG-CACGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 138122 0.67 0.900207
Target:  5'- gGGGACGggggCcGCGaCGGCCG-GCGGGAu -3'
miRNA:   3'- gUCUUGUa---GaUGC-GCCGGCaCGUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.