Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23664 | 3' | -54.2 | NC_005261.1 | + | 138122 | 0.67 | 0.900207 |
Target: 5'- gGGGACGggggCcGCGaCGGCCG-GCGGGAu -3' miRNA: 3'- gUCUUGUa---GaUGC-GCCGGCaCGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 135267 | 0.79 | 0.291748 |
Target: 5'- -uGGACAUC-AUGCGGCCuGUGCAGAAc -3' miRNA: 3'- guCUUGUAGaUGCGCCGG-CACGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 132680 | 0.67 | 0.893465 |
Target: 5'- gAGGACAagaugggcuUCcGCGUGGCCGUGCc--- -3' miRNA: 3'- gUCUUGU---------AGaUGCGCCGGCACGucuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 127594 | 0.66 | 0.930143 |
Target: 5'- -uGGGCGUCUuCGgGGCCGcGCuGAAc -3' miRNA: 3'- guCUUGUAGAuGCgCCGGCaCGuCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 123165 | 0.66 | 0.924665 |
Target: 5'- gCGGGGCGggcGCGCGGgCGUGguGGc -3' miRNA: 3'- -GUCUUGUagaUGCGCCgGCACguCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 121907 | 0.68 | 0.85618 |
Target: 5'- gUAGcuCGUCUGCGC-GCCGUGCGc-- -3' miRNA: 3'- -GUCuuGUAGAUGCGcCGGCACGUcuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 120000 | 0.75 | 0.487607 |
Target: 5'- gAGGGCGccggCUACGCGGCCGUGUg--- -3' miRNA: 3'- gUCUUGUa---GAUGCGCCGGCACGucuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 100595 | 0.72 | 0.632269 |
Target: 5'- aGGAGCGccgCcACGCGGCCGcGCAGGu -3' miRNA: 3'- gUCUUGUa--GaUGCGCCGGCaCGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 98234 | 0.66 | 0.906701 |
Target: 5'- -cGGGCAUCgauuucCGCGGCCcgGUGCGGc- -3' miRNA: 3'- guCUUGUAGau----GCGCCGG--CACGUCuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 97752 | 0.67 | 0.900207 |
Target: 5'- gCGGGGCGggcUCggcgGCGCGGCCG-GCAu-- -3' miRNA: 3'- -GUCUUGU---AGa---UGCGCCGGCaCGUcuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 91987 | 0.66 | 0.912943 |
Target: 5'- gCAGGugGUCcagcAgGCGGUgGUGCAGGu -3' miRNA: 3'- -GUCUugUAGa---UgCGCCGgCACGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 87471 | 0.73 | 0.558635 |
Target: 5'- gCAGGcgcGCGUCagguucgGCGCGGCCGUGCuGGc -3' miRNA: 3'- -GUCU---UGUAGa------UGCGCCGGCACGuCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 83293 | 0.68 | 0.85618 |
Target: 5'- cCAGGcACggCUGCGCggGGUCGUGCAGc- -3' miRNA: 3'- -GUCU-UGuaGAUGCG--CCGGCACGUCuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 81903 | 0.66 | 0.917162 |
Target: 5'- --cAGCAUgaACGCGGCCagcuccuccuugagGUGCGGGAg -3' miRNA: 3'- gucUUGUAgaUGCGCCGG--------------CACGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 81807 | 0.69 | 0.798859 |
Target: 5'- -cGAGCcgCUGCGCGGCgGUgacgccccgcgccgcGCGGAu -3' miRNA: 3'- guCUUGuaGAUGCGCCGgCA---------------CGUCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 77751 | 0.68 | 0.848047 |
Target: 5'- gGGAGCccCUACGCaGCCGgggcgGCGGGGa -3' miRNA: 3'- gUCUUGuaGAUGCGcCGGCa----CGUCUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 68856 | 0.71 | 0.695457 |
Target: 5'- gGGGACGcccUCUGcCGCGGCUGUGCGc-- -3' miRNA: 3'- gUCUUGU---AGAU-GCGCCGGCACGUcuu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 55404 | 0.66 | 0.924665 |
Target: 5'- gAGAcuGCAUCUACGCGcgcGCCG-GCuGGc -3' miRNA: 3'- gUCU--UGUAGAUGCGC---CGGCaCGuCUu -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 54139 | 0.66 | 0.906701 |
Target: 5'- aCGGcacGCcgC-ACGCGGCCGUGCGcGGGg -3' miRNA: 3'- -GUCu--UGuaGaUGCGCCGGCACGU-CUU- -5' |
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23664 | 3' | -54.2 | NC_005261.1 | + | 50934 | 0.7 | 0.726416 |
Target: 5'- gCGGGGCuccccugcuUCUACGCGGCCGUGg---- -3' miRNA: 3'- -GUCUUGu--------AGAUGCGCCGGCACgucuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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