miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 3' -54.2 NC_005261.1 + 4050 0.66 0.935365
Target:  5'- aCAGcGCGuUCUGCGCGGCCaugGCGu-- -3'
miRNA:   3'- -GUCuUGU-AGAUGCGCCGGca-CGUcuu -5'
23664 3' -54.2 NC_005261.1 + 42635 0.69 0.822422
Target:  5'- gGGGAC-UCggccgcCGCGGCCGcGCGGAAc -3'
miRNA:   3'- gUCUUGuAGau----GCGCCGGCaCGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 29916 0.68 0.83116
Target:  5'- -cGAGCggCUGCGCGaGCUG-GCGGAc -3'
miRNA:   3'- guCUUGuaGAUGCGC-CGGCaCGUCUu -5'
23664 3' -54.2 NC_005261.1 + 39880 0.68 0.848047
Target:  5'- cCAGcaGGCcgCgcGCGCGGCUGUGCAGc- -3'
miRNA:   3'- -GUC--UUGuaGa-UGCGCCGGCACGUCuu -5'
23664 3' -54.2 NC_005261.1 + 77751 0.68 0.848047
Target:  5'- gGGAGCccCUACGCaGCCGgggcgGCGGGGa -3'
miRNA:   3'- gUCUUGuaGAUGCGcCGGCa----CGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 83293 0.68 0.85618
Target:  5'- cCAGGcACggCUGCGCggGGUCGUGCAGc- -3'
miRNA:   3'- -GUCU-UGuaGAUGCG--CCGGCACGUCuu -5'
23664 3' -54.2 NC_005261.1 + 121907 0.68 0.85618
Target:  5'- gUAGcuCGUCUGCGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCuuGUAGAUGCGcCGGCACGUcuu -5'
23664 3' -54.2 NC_005261.1 + 1474 0.67 0.871789
Target:  5'- --cAGCA---GCGCGGCCGcGCAGAAg -3'
miRNA:   3'- gucUUGUagaUGCGCCGGCaCGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 32233 0.67 0.879251
Target:  5'- gCGGuGGCcuUCUGCGCGGCCGcgcUGCuGGAg -3'
miRNA:   3'- -GUC-UUGu-AGAUGCGCCGGC---ACGuCUU- -5'
23664 3' -54.2 NC_005261.1 + 28790 0.69 0.813499
Target:  5'- -cGGGCG-CU-CGCGGCCGcgGCGGAGg -3'
miRNA:   3'- guCUUGUaGAuGCGCCGGCa-CGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 81807 0.69 0.798859
Target:  5'- -cGAGCcgCUGCGCGGCgGUgacgccccgcgccgcGCGGAu -3'
miRNA:   3'- guCUUGuaGAUGCGCCGgCA---------------CGUCUu -5'
23664 3' -54.2 NC_005261.1 + 3652 0.69 0.776138
Target:  5'- cUAGcGCGUCUGgagcgcaggcCGCGGCCG-GCAGGc -3'
miRNA:   3'- -GUCuUGUAGAU----------GCGCCGGCaCGUCUu -5'
23664 3' -54.2 NC_005261.1 + 135267 0.79 0.291748
Target:  5'- -uGGACAUC-AUGCGGCCuGUGCAGAAc -3'
miRNA:   3'- guCUUGUAGaUGCGCCGG-CACGUCUU- -5'
23664 3' -54.2 NC_005261.1 + 120000 0.75 0.487607
Target:  5'- gAGGGCGccggCUACGCGGCCGUGUg--- -3'
miRNA:   3'- gUCUUGUa---GAUGCGCCGGCACGucuu -5'
23664 3' -54.2 NC_005261.1 + 87471 0.73 0.558635
Target:  5'- gCAGGcgcGCGUCagguucgGCGCGGCCGUGCuGGc -3'
miRNA:   3'- -GUCU---UGUAGa------UGCGCCGGCACGuCUu -5'
23664 3' -54.2 NC_005261.1 + 100595 0.72 0.632269
Target:  5'- aGGAGCGccgCcACGCGGCCGcGCAGGu -3'
miRNA:   3'- gUCUUGUa--GaUGCGCCGGCaCGUCUu -5'
23664 3' -54.2 NC_005261.1 + 14973 0.71 0.695457
Target:  5'- uGGGGCGaCUGCGCGGCCGcGCcGGc -3'
miRNA:   3'- gUCUUGUaGAUGCGCCGGCaCGuCUu -5'
23664 3' -54.2 NC_005261.1 + 68856 0.71 0.695457
Target:  5'- gGGGACGcccUCUGcCGCGGCUGUGCGc-- -3'
miRNA:   3'- gUCUUGU---AGAU-GCGCCGGCACGUcuu -5'
23664 3' -54.2 NC_005261.1 + 50934 0.7 0.726416
Target:  5'- gCGGGGCuccccugcuUCUACGCGGCCGUGg---- -3'
miRNA:   3'- -GUCUUGu--------AGAUGCGCCGGCACgucuu -5'
23664 3' -54.2 NC_005261.1 + 44440 0.7 0.726416
Target:  5'- uGGAGCGgcUCU-CGCGGCUGUgggaGCAGGAg -3'
miRNA:   3'- gUCUUGU--AGAuGCGCCGGCA----CGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.