miRNA display CGI


Results 1 - 20 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 50506 0.66 0.493337
Target:  5'- cGCCUCGCccaGCCagcGCAGCAgGGCcGUCg -3'
miRNA:   3'- cUGGGGCGc--CGG---CGUCGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 6066 0.66 0.493337
Target:  5'- gGGCCCCucgucccgacgGCGGCgGCaAGCaACGGUgGCg -3'
miRNA:   3'- -CUGGGG-----------CGCCGgCG-UCG-UGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 89767 0.66 0.493337
Target:  5'- aACgCCGUGGCCGaggaGGCccuGCGGgaGCg -3'
miRNA:   3'- cUGgGGCGCCGGCg---UCG---UGCCgaCGg -5'
23664 5' -65.1 NC_005261.1 + 108333 0.66 0.493337
Target:  5'- uGCUCCGCGacCCGCGcCAgGGCcGCCg -3'
miRNA:   3'- cUGGGGCGCc-GGCGUcGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12167 0.66 0.493337
Target:  5'- aGCCCCGCacaGGCC--AGCGCcGCcGCCa -3'
miRNA:   3'- cUGGGGCG---CCGGcgUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 126524 0.66 0.493337
Target:  5'- gGGCgCCCGCGcccGCCGCgccucGGcCACGcGCcGCCg -3'
miRNA:   3'- -CUG-GGGCGC---CGGCG-----UC-GUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 103147 0.66 0.493337
Target:  5'- cGCCUCGCGGUacCGGC-CGaagaGCUGCCa -3'
miRNA:   3'- cUGGGGCGCCGgcGUCGuGC----CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 121254 0.66 0.493337
Target:  5'- cGACUCgGgGuccGCCGCAGaCGgGGCgGCCg -3'
miRNA:   3'- -CUGGGgCgC---CGGCGUC-GUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 59373 0.66 0.493337
Target:  5'- cGCCCgccaGCGcCCGCGcCACGGC-GCCg -3'
miRNA:   3'- cUGGGg---CGCcGGCGUcGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 107860 0.66 0.493337
Target:  5'- cGCCCuCGcCGGCCGCccGCGCGcucGC-GCCc -3'
miRNA:   3'- cUGGG-GC-GCCGGCGu-CGUGC---CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 117997 0.66 0.493337
Target:  5'- --gCCUGaCGGCgGCGGCGCuggacGCUGUCg -3'
miRNA:   3'- cugGGGC-GCCGgCGUCGUGc----CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 77795 0.66 0.493337
Target:  5'- uACCCCGgcgaGGgCGCGcccGC-CGaGCUGCCg -3'
miRNA:   3'- cUGGGGCg---CCgGCGU---CGuGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 28233 0.66 0.493337
Target:  5'- uACCCCcCGGCgCGCgcgauAGCGgGgGCUGCUc -3'
miRNA:   3'- cUGGGGcGCCG-GCG-----UCGUgC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 19067 0.66 0.493337
Target:  5'- gGGCUgCGCGGCUcuCGGCGCGuGCUuGCg -3'
miRNA:   3'- -CUGGgGCGCCGGc-GUCGUGC-CGA-CGg -5'
23664 5' -65.1 NC_005261.1 + 21231 0.66 0.493337
Target:  5'- cGGgCCCGuCGGCUgGCGGCuuuucAgGGCgUGCCg -3'
miRNA:   3'- -CUgGGGC-GCCGG-CGUCG-----UgCCG-ACGG- -5'
23664 5' -65.1 NC_005261.1 + 129591 0.66 0.493337
Target:  5'- cGCgCCGCGGgacaCGCGGCaauuucGCGGCgggGUCg -3'
miRNA:   3'- cUGgGGCGCCg---GCGUCG------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 85649 0.66 0.493337
Target:  5'- -gUCCaugaaGCGccGCCGCAGCACgGGCUGg- -3'
miRNA:   3'- cuGGGg----CGC--CGGCGUCGUG-CCGACgg -5'
23664 5' -65.1 NC_005261.1 + 77985 0.66 0.493337
Target:  5'- aGCgCCCGUGccgugccuGCCGCAGCAgCaGCaGCCg -3'
miRNA:   3'- cUG-GGGCGC--------CGGCGUCGU-GcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 98288 0.66 0.493337
Target:  5'- cGCCCgGCGcGuCCGCGGCcucgGgGGCgggcGCCg -3'
miRNA:   3'- cUGGGgCGC-C-GGCGUCG----UgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 49298 0.66 0.493337
Target:  5'- --gCCCGCGGCgGUgAGCGCcGCgcaGCCc -3'
miRNA:   3'- cugGGGCGCCGgCG-UCGUGcCGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.