miRNA display CGI


Results 1 - 20 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 59569 0.66 0.440153
Target:  5'- cGCgCgCGCGcGCCGCAGC--GGgUGCCg -3'
miRNA:   3'- cUGgG-GCGC-CGGCGUCGugCCgACGG- -5'
23664 5' -65.1 NC_005261.1 + 98288 0.66 0.493337
Target:  5'- cGCCCgGCGcGuCCGCGGCcucgGgGGCgggcGCCg -3'
miRNA:   3'- cUGGGgCGC-C-GGCGUCG----UgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 116647 0.66 0.440153
Target:  5'- aGGCCCgCGCGcCCGCcGCcgaccugcuccGCGGC-GCCg -3'
miRNA:   3'- -CUGGG-GCGCcGGCGuCG-----------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12203 0.66 0.440153
Target:  5'- cGCCgCCGCcgguGCCGCcGcCGCuGCUGCCg -3'
miRNA:   3'- cUGG-GGCGc---CGGCGuC-GUGcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 119601 0.66 0.440153
Target:  5'- cGCCCCGUaugccGaGCCGCuGUacgugcacuGCGGCgugGCCg -3'
miRNA:   3'- cUGGGGCG-----C-CGGCGuCG---------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 46497 0.66 0.440153
Target:  5'- -cCUCCGCgGGgCGCAGCcCGGC-GUCg -3'
miRNA:   3'- cuGGGGCG-CCgGCGUCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 29762 0.66 0.440153
Target:  5'- aGAgCCUGCGGCgCGC-GUACGcGCccaugGCCu -3'
miRNA:   3'- -CUgGGGCGCCG-GCGuCGUGC-CGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 3910 0.66 0.448794
Target:  5'- gGGCgCCCGC-GCCGcCGGCGcCGGCcuccggguagGCCa -3'
miRNA:   3'- -CUG-GGGCGcCGGC-GUCGU-GCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 70869 0.66 0.440153
Target:  5'- cGGCCgCCGUGG-CGUGGC-CGGCggugcacaugGCCg -3'
miRNA:   3'- -CUGG-GGCGCCgGCGUCGuGCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 15206 0.66 0.440153
Target:  5'- cAUCgCGCGGUCGUAGa--GGCUcGCCg -3'
miRNA:   3'- cUGGgGCGCCGGCGUCgugCCGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 26053 0.66 0.446192
Target:  5'- cGGCggCCGCGGCCGCuugaagcgaaaagcAGaCGCGGCaGCg -3'
miRNA:   3'- -CUGg-GGCGCCGGCG--------------UC-GUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 56783 0.66 0.443598
Target:  5'- aGACgCCGCGGuuGCccacuuccggcagcgGGcCACGGUguuccuggUGCCg -3'
miRNA:   3'- -CUGgGGCGCCggCG---------------UC-GUGCCG--------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 93491 0.66 0.439294
Target:  5'- --gCCCGCGGCgaagcgcgcgaacCGCGGCGCcGUguugGCCg -3'
miRNA:   3'- cugGGGCGCCG-------------GCGUCGUGcCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 29324 0.66 0.448794
Target:  5'- cGCCgCCGCccGGCCGCGuGCGCuucGGCgGCg -3'
miRNA:   3'- cUGG-GGCG--CCGGCGU-CGUG---CCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 101208 0.66 0.440153
Target:  5'- cGACUCCaGCugccGCCGCAGCGCgucgagguGGC-GCCu -3'
miRNA:   3'- -CUGGGG-CGc---CGGCGUCGUG--------CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 58340 0.66 0.443598
Target:  5'- cGCCUCGCGgaGCCGCGccggccaguccagguGUGCGGCgacgucgGCCu -3'
miRNA:   3'- cUGGGGCGC--CGGCGU---------------CGUGCCGa------CGG- -5'
23664 5' -65.1 NC_005261.1 + 57249 0.66 0.447926
Target:  5'- cGAUCCgCGUGccGCCGCAcacgcuccgcaucGCGCGGCaGCUg -3'
miRNA:   3'- -CUGGG-GCGC--CGGCGU-------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 11944 0.66 0.440153
Target:  5'- cGCgCCGCGGCgGCucgcccGGCGCGcGCU-CCa -3'
miRNA:   3'- cUGgGGCGCCGgCG------UCGUGC-CGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 31513 0.66 0.448794
Target:  5'- --gCUCGCGG-CGCugGGCAacCGGCUGCUg -3'
miRNA:   3'- cugGGGCGCCgGCG--UCGU--GCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 128529 0.66 0.440153
Target:  5'- -uCCUgGCGGCUGgAGUGCuGCUGCg -3'
miRNA:   3'- cuGGGgCGCCGGCgUCGUGcCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.