miRNA display CGI


Results 21 - 40 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 37423 0.66 0.448794
Target:  5'- aACCCCuacGCCGUGGCGCgcgGGCUcGCCg -3'
miRNA:   3'- cUGGGGcgcCGGCGUCGUG---CCGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 70869 0.66 0.440153
Target:  5'- cGGCCgCCGUGG-CGUGGC-CGGCggugcacaugGCCg -3'
miRNA:   3'- -CUGG-GGCGCCgGCGUCGuGCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 31513 0.66 0.448794
Target:  5'- --gCUCGCGG-CGCugGGCAacCGGCUGCUg -3'
miRNA:   3'- cugGGGCGCCgGCG--UCGU--GCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 56783 0.66 0.443598
Target:  5'- aGACgCCGCGGuuGCccacuuccggcagcgGGcCACGGUguuccuggUGCCg -3'
miRNA:   3'- -CUGgGGCGCCggCG---------------UC-GUGCCG--------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 58340 0.66 0.443598
Target:  5'- cGCCUCGCGgaGCCGCGccggccaguccagguGUGCGGCgacgucgGCCu -3'
miRNA:   3'- cUGGGGCGC--CGGCGU---------------CGUGCCGa------CGG- -5'
23664 5' -65.1 NC_005261.1 + 26053 0.66 0.446192
Target:  5'- cGGCggCCGCGGCCGCuugaagcgaaaagcAGaCGCGGCaGCg -3'
miRNA:   3'- -CUGg-GGCGCCGGCG--------------UC-GUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 50414 0.66 0.456651
Target:  5'- aGCCCCGCGucgcggaGCCGCucgugcagcguGCGCGugaaGCUGCg -3'
miRNA:   3'- cUGGGGCGC-------CGGCGu----------CGUGC----CGACGg -5'
23664 5' -65.1 NC_005261.1 + 94245 0.66 0.448794
Target:  5'- cGACCaCGaUGGCCacggcGCAGgGCGGC-GCCg -3'
miRNA:   3'- -CUGGgGC-GCCGG-----CGUCgUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 70381 0.66 0.448794
Target:  5'- cGGCgCCGCuGGCCGaCAcGCACGacGC-GCCg -3'
miRNA:   3'- -CUGgGGCG-CCGGC-GU-CGUGC--CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 116270 0.66 0.452277
Target:  5'- cGCCCgGCGGCguCGUgauGGCGucgugcuucaccagcCGGUUGCCg -3'
miRNA:   3'- cUGGGgCGCCG--GCG---UCGU---------------GCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 46668 0.66 0.448794
Target:  5'- -uCCgCGCguuGGCCGCGcGCuccACGGCgGCCg -3'
miRNA:   3'- cuGGgGCG---CCGGCGU-CG---UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 16295 0.66 0.457529
Target:  5'- gGGCgCCGUcgGGCC-CAGCGgCGGCcggGCCc -3'
miRNA:   3'- -CUGgGGCG--CCGGcGUCGU-GCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 59569 0.66 0.440153
Target:  5'- cGCgCgCGCGcGCCGCAGC--GGgUGCCg -3'
miRNA:   3'- cUGgG-GCGC-CGGCGUCGugCCgACGG- -5'
23664 5' -65.1 NC_005261.1 + 101208 0.66 0.440153
Target:  5'- cGACUCCaGCugccGCCGCAGCGCgucgagguGGC-GCCu -3'
miRNA:   3'- -CUGGGG-CGc---CGGCGUCGUG--------CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 30963 0.66 0.456651
Target:  5'- aGGCCcgCCGCGacggcccGCCGCGGCGCaagcgcaagucGGCcgggGCCa -3'
miRNA:   3'- -CUGG--GGCGC-------CGGCGUCGUG-----------CCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 34410 0.66 0.448794
Target:  5'- cGACCggGUGGCgCGCGGCccGCGcCUGCCc -3'
miRNA:   3'- -CUGGggCGCCG-GCGUCG--UGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 63033 0.66 0.448794
Target:  5'- cGGCgCCCGCGGCgaggcggucgCGCAGCA--GC-GCCg -3'
miRNA:   3'- -CUG-GGGCGCCG----------GCGUCGUgcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 30706 0.66 0.457529
Target:  5'- aGGCCCgCGgGaGCCcCGGCGCcgGGCcGCCa -3'
miRNA:   3'- -CUGGG-GCgC-CGGcGUCGUG--CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 93491 0.66 0.439294
Target:  5'- --gCCCGCGGCgaagcgcgcgaacCGCGGCGCcGUguugGCCg -3'
miRNA:   3'- cugGGGCGCCG-------------GCGUCGUGcCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 119601 0.66 0.440153
Target:  5'- cGCCCCGUaugccGaGCCGCuGUacgugcacuGCGGCgugGCCg -3'
miRNA:   3'- cUGGGGCG-----C-CGGCGuCG---------UGCCGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.