miRNA display CGI


Results 41 - 60 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 38591 0.66 0.466353
Target:  5'- -uCCCUGCuGGCgGCc-CGCGGCUGgCg -3'
miRNA:   3'- cuGGGGCG-CCGgCGucGUGCCGACgG- -5'
23664 5' -65.1 NC_005261.1 + 93491 0.66 0.439294
Target:  5'- --gCCCGCGGCgaagcgcgcgaacCGCGGCGCcGUguugGCCg -3'
miRNA:   3'- cugGGGCGCCG-------------GCGUCGUGcCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 70869 0.66 0.440153
Target:  5'- cGGCCgCCGUGG-CGUGGC-CGGCggugcacaugGCCg -3'
miRNA:   3'- -CUGG-GGCGCCgGCGUCGuGCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 57249 0.66 0.447926
Target:  5'- cGAUCCgCGUGccGCCGCAcacgcuccgcaucGCGCGGCaGCUg -3'
miRNA:   3'- -CUGGG-GCGC--CGGCGU-------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 107508 0.66 0.457529
Target:  5'- cGCCaCGCaGGCCGCGccgaagggcagcGCGuCGGCgGCCa -3'
miRNA:   3'- cUGGgGCG-CCGGCGU------------CGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 56783 0.66 0.443598
Target:  5'- aGACgCCGCGGuuGCccacuuccggcagcgGGcCACGGUguuccuggUGCCg -3'
miRNA:   3'- -CUGgGGCGCCggCG---------------UC-GUGCCG--------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 13116 0.66 0.457529
Target:  5'- gGGCgUCgGCGGCCGCGGgGCGcGUgugGUCg -3'
miRNA:   3'- -CUG-GGgCGCCGGCGUCgUGC-CGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 63832 0.66 0.466353
Target:  5'- uGCCUCGUGGCgCGCcaccuGCA--GCUGCCc -3'
miRNA:   3'- cUGGGGCGCCG-GCGu----CGUgcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 34410 0.66 0.448794
Target:  5'- cGACCggGUGGCgCGCGGCccGCGcCUGCCc -3'
miRNA:   3'- -CUGGggCGCCG-GCGUCG--UGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 94245 0.66 0.448794
Target:  5'- cGACCaCGaUGGCCacggcGCAGgGCGGC-GCCg -3'
miRNA:   3'- -CUGGgGC-GCCGG-----CGUCgUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 116647 0.66 0.440153
Target:  5'- aGGCCCgCGCGcCCGCcGCcgaccugcuccGCGGC-GCCg -3'
miRNA:   3'- -CUGGG-GCGCcGGCGuCG-----------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3832 0.66 0.457529
Target:  5'- cGGgCCCGgGcGCUgGCGGCAgCGGC-GCCg -3'
miRNA:   3'- -CUgGGGCgC-CGG-CGUCGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 78774 0.66 0.457529
Target:  5'- uGCCCCGCccccucccccGCCGCAGgggcucccucuCACGGCUcCCc -3'
miRNA:   3'- cUGGGGCGc---------CGGCGUC-----------GUGCCGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 59569 0.66 0.440153
Target:  5'- cGCgCgCGCGcGCCGCAGC--GGgUGCCg -3'
miRNA:   3'- cUGgG-GCGC-CGGCGUCGugCCgACGG- -5'
23664 5' -65.1 NC_005261.1 + 98212 0.66 0.448794
Target:  5'- gGGCgCCGCcaCgGCAGCGCGGCggGCa -3'
miRNA:   3'- -CUGgGGCGccGgCGUCGUGCCGa-CGg -5'
23664 5' -65.1 NC_005261.1 + 46497 0.66 0.440153
Target:  5'- -cCUCCGCgGGgCGCAGCcCGGC-GUCg -3'
miRNA:   3'- cuGGGGCG-CCgGCGUCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 119601 0.66 0.440153
Target:  5'- cGCCCCGUaugccGaGCCGCuGUacgugcacuGCGGCgugGCCg -3'
miRNA:   3'- cUGGGGCG-----C-CGGCGuCG---------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 34733 0.66 0.466353
Target:  5'- cGCCCCcugGCGGCCGCGGggUGG-UGUUu -3'
miRNA:   3'- cUGGGG---CGCCGGCGUCguGCCgACGG- -5'
23664 5' -65.1 NC_005261.1 + 12954 0.66 0.457529
Target:  5'- uGGCCCgCGCGGCgCGC-GCACcccagacaGCgaggGCCg -3'
miRNA:   3'- -CUGGG-GCGCCG-GCGuCGUGc-------CGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 46316 0.66 0.448794
Target:  5'- aGCCCCGCgaGGCUGC-GCuuGGCcaUGCg -3'
miRNA:   3'- cUGGGGCG--CCGGCGuCGugCCG--ACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.