miRNA display CGI


Results 61 - 80 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 42233 0.66 0.448794
Target:  5'- aGCUCCGCcGCgCGCAGCGCcucgaaCUGCCc -3'
miRNA:   3'- cUGGGGCGcCG-GCGUCGUGcc----GACGG- -5'
23664 5' -65.1 NC_005261.1 + 75955 0.66 0.457529
Target:  5'- uGCCCCGagguggaGGUcaCGCAGCucuucccgggcGCGGCcGCCc -3'
miRNA:   3'- cUGGGGCg------CCG--GCGUCG-----------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 50414 0.66 0.456651
Target:  5'- aGCCCCGCGucgcggaGCCGCucgugcagcguGCGCGugaaGCUGCg -3'
miRNA:   3'- cUGGGGCGC-------CGGCGu----------CGUGC----CGACGg -5'
23664 5' -65.1 NC_005261.1 + 84372 0.66 0.466353
Target:  5'- --gCCCGCGGgCuCGGCcuCGGCcGCCg -3'
miRNA:   3'- cugGGGCGCCgGcGUCGu-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 6259 0.66 0.452277
Target:  5'- cGCCCCGCGgggcggcccGCCGcCAaacucauuguaauauGCGCGGCcGUCg -3'
miRNA:   3'- cUGGGGCGC---------CGGC-GU---------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 13116 0.66 0.457529
Target:  5'- gGGCgUCgGCGGCCGCGGgGCGcGUgugGUCg -3'
miRNA:   3'- -CUG-GGgCGCCGGCGUCgUGC-CGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 67632 0.66 0.452277
Target:  5'- aGACCacguacgccgagaaCGCgGGCCGCccguccgcGCGCGGC-GCCa -3'
miRNA:   3'- -CUGGg-------------GCG-CCGGCGu-------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 98046 0.66 0.448794
Target:  5'- --aCUgGCGGCCGCGG-GCGGCggGaCCg -3'
miRNA:   3'- cugGGgCGCCGGCGUCgUGCCGa-C-GG- -5'
23664 5' -65.1 NC_005261.1 + 30963 0.66 0.456651
Target:  5'- aGGCCcgCCGCGacggcccGCCGCGGCGCaagcgcaagucGGCcgggGCCa -3'
miRNA:   3'- -CUGG--GGCGC-------CGGCGUCGUG-----------CCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 27282 0.66 0.465467
Target:  5'- cGGCCCC-CGGaCCGCccucgcgAGCA-GGCcggGCCa -3'
miRNA:   3'- -CUGGGGcGCC-GGCG-------UCGUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 78774 0.66 0.457529
Target:  5'- uGCCCCGCccccucccccGCCGCAGgggcucccucuCACGGCUcCCc -3'
miRNA:   3'- cUGGGGCGc---------CGGCGUC-----------GUGCCGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 16729 0.66 0.466353
Target:  5'- uGGCCCUcgGCGaGCCGC-GCG-GGCgccGCCa -3'
miRNA:   3'- -CUGGGG--CGC-CGGCGuCGUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 63033 0.66 0.448794
Target:  5'- cGGCgCCCGCGGCgaggcggucgCGCAGCA--GC-GCCg -3'
miRNA:   3'- -CUG-GGGCGCCG----------GCGUCGUgcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 98288 0.66 0.493337
Target:  5'- cGCCCgGCGcGuCCGCGGCcucgGgGGCgggcGCCg -3'
miRNA:   3'- cUGGGgCGC-C-GGCGUCG----UgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 119601 0.66 0.440153
Target:  5'- cGCCCCGUaugccGaGCCGCuGUacgugcacuGCGGCgugGCCg -3'
miRNA:   3'- cUGGGGCG-----C-CGGCGuCG---------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 101851 0.66 0.466353
Target:  5'- cGCgCCCGcCGGCCGCcugcAGCACguccgcgcgcagGGCgcccaGCCg -3'
miRNA:   3'- cUG-GGGC-GCCGGCG----UCGUG------------CCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 34410 0.66 0.448794
Target:  5'- cGACCggGUGGCgCGCGGCccGCGcCUGCCc -3'
miRNA:   3'- -CUGGggCGCCG-GCGUCG--UGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 116270 0.66 0.452277
Target:  5'- cGCCCgGCGGCguCGUgauGGCGucgugcuucaccagcCGGUUGCCg -3'
miRNA:   3'- cUGGGgCGCCG--GCG---UCGU---------------GCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 46668 0.66 0.448794
Target:  5'- -uCCgCGCguuGGCCGCGcGCuccACGGCgGCCg -3'
miRNA:   3'- cuGGgGCG---CCGGCGU-CG---UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 119770 0.66 0.47437
Target:  5'- cGGCCCagaacggcucgguCGCGuaCCGCAGCGCGGa-GCUg -3'
miRNA:   3'- -CUGGG-------------GCGCc-GGCGUCGUGCCgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.