Results 21 - 40 of 704 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23664 | 5' | -65.1 | NC_005261.1 | + | 28791 | 0.8 | 0.053552 |
Target: 5'- gGGCgCUCGCGGCCGCGGCGgaGGCaGCCg -3' miRNA: 3'- -CUG-GGGCGCCGGCGUCGUg-CCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 102784 | 0.8 | 0.05219 |
Target: 5'- aGGCCUCGCcccGGCCGCgAGCGCGGCgcccaGCCg -3' miRNA: 3'- -CUGGGGCG---CCGGCG-UCGUGCCGa----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 10524 | 0.8 | 0.050471 |
Target: 5'- gGGCCCCGCGGCgCGCucgcugucgcccccGGCGCGcCUGCCg -3' miRNA: 3'- -CUGGGGCGCCG-GCG--------------UCGUGCcGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 66278 | 0.79 | 0.067457 |
Target: 5'- gGGCgCCCGCGGCUGUcgcagugcgucaGGCGCGGCacgGCCa -3' miRNA: 3'- -CUG-GGGCGCCGGCG------------UCGUGCCGa--CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 119110 | 0.79 | 0.064919 |
Target: 5'- aGACCcuuaaagauguaggCCGCGGCCGCGGCGCGGCcaucucggauccGCCc -3' miRNA: 3'- -CUGG--------------GGCGCCGGCGUCGUGCCGa-----------CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 98725 | 0.79 | 0.062473 |
Target: 5'- cGGCCUugggggcaCGCGGCCGCGcgggcguuggccGCGCGGUUGCCg -3' miRNA: 3'- -CUGGG--------GCGCCGGCGU------------CGUGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 68122 | 0.79 | 0.062473 |
Target: 5'- aGCUgCGCgGGCCGCGGCGCGGCgaccgcGCCg -3' miRNA: 3'- cUGGgGCG-CCGGCGUCGUGCCGa-----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 118228 | 0.79 | 0.060892 |
Target: 5'- uGACggCCGCGGCCGCGGCcuacgccgucuGCGGCgUGCCg -3' miRNA: 3'- -CUGg-GGCGCCGGCGUCG-----------UGCCG-ACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 52201 | 0.78 | 0.080006 |
Target: 5'- aGCCCCGCGGCggcucaguacaccuCGCGGCGCuGCgGCCg -3' miRNA: 3'- cUGGGGCGCCG--------------GCGUCGUGcCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 5431 | 0.78 | 0.0747 |
Target: 5'- aGACgaCCGCGGCCGCGGCGgCGGCaacagcGCCc -3' miRNA: 3'- -CUGg-GGCGCCGGCGUCGU-GCCGa-----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 118922 | 0.78 | 0.072822 |
Target: 5'- cGGCgCCGCGGgCGCGGCgccgcGCGGCUGgCCg -3' miRNA: 3'- -CUGgGGCGCCgGCGUCG-----UGCCGAC-GG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 109030 | 0.78 | 0.07099 |
Target: 5'- cGCCgCCGUGGCgCGCAGCcgcGCGGCcGCCa -3' miRNA: 3'- cUGG-GGCGCCG-GCGUCG---UGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 28283 | 0.78 | 0.070449 |
Target: 5'- cGCCgCCGCGGCCGCGGUcgucuccuucguucGCGGC-GCCc -3' miRNA: 3'- cUGG-GGCGCCGGCGUCG--------------UGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 123202 | 0.77 | 0.093818 |
Target: 5'- gGACCCaGCcGCCGCguaAGCGCGGCcUGCCg -3' miRNA: 3'- -CUGGGgCGcCGGCG---UCGUGCCG-ACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 122353 | 0.77 | 0.093818 |
Target: 5'- cGCCUgGCGGCCGCGGCuCGcGCgGCCc -3' miRNA: 3'- cUGGGgCGCCGGCGUCGuGC-CGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 118048 | 0.77 | 0.091484 |
Target: 5'- cGACgCCCgcgcugGCGGCCGCGGCAgCGGCcgcaGCCg -3' miRNA: 3'- -CUG-GGG------CGCCGGCGUCGU-GCCGa---CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 135018 | 0.77 | 0.089205 |
Target: 5'- gGGCCCgcaCGCGGCCGCGGC--GGCgagGCCg -3' miRNA: 3'- -CUGGG---GCGCCGGCGUCGugCCGa--CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 35902 | 0.77 | 0.089205 |
Target: 5'- aGAcCCCCGCcGCgGCAGCGCGGCcccgcGCCg -3' miRNA: 3'- -CU-GGGGCGcCGgCGUCGUGCCGa----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 136916 | 0.77 | 0.084807 |
Target: 5'- gGGCCgCGCGGCCGCGGCGCauguGGUgguacauggGCCg -3' miRNA: 3'- -CUGGgGCGCCGGCGUCGUG----CCGa--------CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 75822 | 0.77 | 0.095967 |
Target: 5'- uGCCCggCGCGGCCGCGcccggggaggggcGCGCGGC-GCCg -3' miRNA: 3'- cUGGG--GCGCCGGCGU-------------CGUGCCGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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