Results 1 - 20 of 704 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23664 | 5' | -65.1 | NC_005261.1 | + | 38159 | 1.09 | 0.000351 |
Target: 5'- gGACCCCGCGGCCGCAGCACGGCUGCCu -3' miRNA: 3'- -CUGGGGCGCCGGCGUCGUGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 121384 | 0.89 | 0.011915 |
Target: 5'- cGCCCCGCGGCgGCGGCgccugcccgagugcgACGGCUGCCg -3' miRNA: 3'- cUGGGGCGCCGgCGUCG---------------UGCCGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 4300 | 0.88 | 0.014937 |
Target: 5'- gGGCCCCGCGGCCGCcgcguagcGCGCGGCcGCCu -3' miRNA: 3'- -CUGGGGCGCCGGCGu-------CGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 106218 | 0.87 | 0.017485 |
Target: 5'- aGCgCCCGCGGCCGCcuGGCGCGGCcGCCg -3' miRNA: 3'- cUG-GGGCGCCGGCG--UCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 32316 | 0.85 | 0.024576 |
Target: 5'- cGCCgCCGCGGCCGCGGCGCccGGCgugGCCu -3' miRNA: 3'- cUGG-GGCGCCGGCGUCGUG--CCGa--CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 100689 | 0.84 | 0.030281 |
Target: 5'- aGugCaCCGCGGCCGCGGCGCGcGCcGCCc -3' miRNA: 3'- -CugG-GGCGCCGGCGUCGUGC-CGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 106576 | 0.83 | 0.031081 |
Target: 5'- cGGCCCCGgGGCCGCcGCGCGGC-GCUc -3' miRNA: 3'- -CUGGGGCgCCGGCGuCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 135118 | 0.82 | 0.038069 |
Target: 5'- gGACCCCGCGucuCCGCAGCGCGGCgggggagacgacGCCg -3' miRNA: 3'- -CUGGGGCGCc--GGCGUCGUGCCGa-----------CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 234 | 0.82 | 0.038267 |
Target: 5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3' miRNA: 3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 137917 | 0.82 | 0.038267 |
Target: 5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3' miRNA: 3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 1399 | 0.82 | 0.042448 |
Target: 5'- gGGCgCCGCGGCCGCGGCGgCGGCggggGCg -3' miRNA: 3'- -CUGgGGCGCCGGCGUCGU-GCCGa---CGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 31202 | 0.81 | 0.043561 |
Target: 5'- cGCCCCGaGGUCGCGGCGCGGCUcGCg -3' miRNA: 3'- cUGGGGCgCCGGCGUCGUGCCGA-CGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 32533 | 0.81 | 0.043561 |
Target: 5'- cGGCCCCGgcccCGGCCGCGGCGCGG--GCCg -3' miRNA: 3'- -CUGGGGC----GCCGGCGUCGUGCCgaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 30238 | 0.81 | 0.045755 |
Target: 5'- uGGCCCCGCuGGCgcgguacucgacgCGCGGCGCGGCgGCCc -3' miRNA: 3'- -CUGGGGCG-CCG-------------GCGUCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 3509 | 0.81 | 0.049568 |
Target: 5'- cGCCagCGCGGCCGCcuccAGCGCGGCgGCCg -3' miRNA: 3'- cUGGg-GCGCCGGCG----UCGUGCCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 10524 | 0.8 | 0.050471 |
Target: 5'- gGGCCCCGCGGCgCGCucgcugucgcccccGGCGCGcCUGCCg -3' miRNA: 3'- -CUGGGGCGCCG-GCG--------------UCGUGCcGACGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 102784 | 0.8 | 0.05219 |
Target: 5'- aGGCCUCGCcccGGCCGCgAGCGCGGCgcccaGCCg -3' miRNA: 3'- -CUGGGGCG---CCGGCG-UCGUGCCGa----CGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 28791 | 0.8 | 0.053552 |
Target: 5'- gGGCgCUCGCGGCCGCGGCGgaGGCaGCCg -3' miRNA: 3'- -CUG-GGGCGCCGGCGUCGUg-CCGaCGG- -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 101082 | 0.8 | 0.054948 |
Target: 5'- cACgCCCGCGGCCGCcugcAGCGCGGCcGCg -3' miRNA: 3'- cUG-GGGCGCCGGCG----UCGUGCCGaCGg -5' |
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23664 | 5' | -65.1 | NC_005261.1 | + | 102315 | 0.8 | 0.054948 |
Target: 5'- cGCgCCGCGGCCGCGGCGC-GCaGCCg -3' miRNA: 3'- cUGgGGCGCCGGCGUCGUGcCGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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