miRNA display CGI


Results 21 - 40 of 704 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 4881 0.8 0.056234
Target:  5'- cGGCCgccucagCCGCGGCCGCcucggcuucGGCgGCGGCUGCCu -3'
miRNA:   3'- -CUGG-------GGCGCCGGCG---------UCG-UGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 103597 0.8 0.056234
Target:  5'- cGCCgCCGUGGCCGCGGCggcagcgcgggagGCGGCggcgGCCa -3'
miRNA:   3'- cUGG-GGCGCCGGCGUCG-------------UGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 42642 0.8 0.05935
Target:  5'- cGGCCgCCGCGGCCGCgcggaaccAGCcaaGCGGCgGCCg -3'
miRNA:   3'- -CUGG-GGCGCCGGCG--------UCG---UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 118228 0.79 0.060892
Target:  5'- uGACggCCGCGGCCGCGGCcuacgccgucuGCGGCgUGCCg -3'
miRNA:   3'- -CUGg-GGCGCCGGCGUCG-----------UGCCG-ACGG- -5'
23664 5' -65.1 NC_005261.1 + 68122 0.79 0.062473
Target:  5'- aGCUgCGCgGGCCGCGGCGCGGCgaccgcGCCg -3'
miRNA:   3'- cUGGgGCG-CCGGCGUCGUGCCGa-----CGG- -5'
23664 5' -65.1 NC_005261.1 + 98725 0.79 0.062473
Target:  5'- cGGCCUugggggcaCGCGGCCGCGcgggcguuggccGCGCGGUUGCCg -3'
miRNA:   3'- -CUGGG--------GCGCCGGCGU------------CGUGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 119110 0.79 0.064919
Target:  5'- aGACCcuuaaagauguaggCCGCGGCCGCGGCGCGGCcaucucggauccGCCc -3'
miRNA:   3'- -CUGG--------------GGCGCCGGCGUCGUGCCGa-----------CGG- -5'
23664 5' -65.1 NC_005261.1 + 66278 0.79 0.067457
Target:  5'- gGGCgCCCGCGGCUGUcgcagugcgucaGGCGCGGCacgGCCa -3'
miRNA:   3'- -CUG-GGGCGCCGGCG------------UCGUGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 28283 0.78 0.070449
Target:  5'- cGCCgCCGCGGCCGCGGUcgucuccuucguucGCGGC-GCCc -3'
miRNA:   3'- cUGG-GGCGCCGGCGUCG--------------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 109030 0.78 0.07099
Target:  5'- cGCCgCCGUGGCgCGCAGCcgcGCGGCcGCCa -3'
miRNA:   3'- cUGG-GGCGCCG-GCGUCG---UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 118922 0.78 0.072822
Target:  5'- cGGCgCCGCGGgCGCGGCgccgcGCGGCUGgCCg -3'
miRNA:   3'- -CUGgGGCGCCgGCGUCG-----UGCCGAC-GG- -5'
23664 5' -65.1 NC_005261.1 + 5431 0.78 0.0747
Target:  5'- aGACgaCCGCGGCCGCGGCGgCGGCaacagcGCCc -3'
miRNA:   3'- -CUGg-GGCGCCGGCGUCGU-GCCGa-----CGG- -5'
23664 5' -65.1 NC_005261.1 + 52201 0.78 0.080006
Target:  5'- aGCCCCGCGGCggcucaguacaccuCGCGGCGCuGCgGCCg -3'
miRNA:   3'- cUGGGGCGCCG--------------GCGUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 107893 0.77 0.084593
Target:  5'- cGGCCcgcuuguCCGCGGCCGCGGCcuCGGCcacgagUGCCg -3'
miRNA:   3'- -CUGG-------GGCGCCGGCGUCGu-GCCG------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 136916 0.77 0.084807
Target:  5'- gGGCCgCGCGGCCGCGGCGCauguGGUgguacauggGCCg -3'
miRNA:   3'- -CUGGgGCGCCGGCGUCGUG----CCGa--------CGG- -5'
23664 5' -65.1 NC_005261.1 + 35902 0.77 0.089205
Target:  5'- aGAcCCCCGCcGCgGCAGCGCGGCcccgcGCCg -3'
miRNA:   3'- -CU-GGGGCGcCGgCGUCGUGCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 135018 0.77 0.089205
Target:  5'- gGGCCCgcaCGCGGCCGCGGC--GGCgagGCCg -3'
miRNA:   3'- -CUGGG---GCGCCGGCGUCGugCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 118048 0.77 0.091484
Target:  5'- cGACgCCCgcgcugGCGGCCGCGGCAgCGGCcgcaGCCg -3'
miRNA:   3'- -CUG-GGG------CGCCGGCGUCGU-GCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 122353 0.77 0.093818
Target:  5'- cGCCUgGCGGCCGCGGCuCGcGCgGCCc -3'
miRNA:   3'- cUGGGgCGCCGGCGUCGuGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 123202 0.77 0.093818
Target:  5'- gGACCCaGCcGCCGCguaAGCGCGGCcUGCCg -3'
miRNA:   3'- -CUGGGgCGcCGGCG---UCGUGCCG-ACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.