miRNA display CGI


Results 41 - 60 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 75822 0.77 0.095967
Target:  5'- uGCCCggCGCGGCCGCGcccggggaggggcGCGCGGC-GCCg -3'
miRNA:   3'- cUGGG--GCGCCGGCGU-------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 65815 0.77 0.096209
Target:  5'- gGugCCCG-GGCgGCGGCGCGaaGCUGCCc -3'
miRNA:   3'- -CugGGGCgCCGgCGUCGUGC--CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 67943 0.77 0.096209
Target:  5'- -cCCCCGcCGGcCCGCucGCGCGGCcGCCg -3'
miRNA:   3'- cuGGGGC-GCC-GGCGu-CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 134569 0.76 0.098657
Target:  5'- cGGCgCCGCGGCUGC-GCAgGGCggGCCu -3'
miRNA:   3'- -CUGgGGCGCCGGCGuCGUgCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 107803 0.76 0.098657
Target:  5'- gGGCCUCGCGcGCgGCGGCccuaGCGGCcGCCg -3'
miRNA:   3'- -CUGGGGCGC-CGgCGUCG----UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 83581 0.76 0.098657
Target:  5'- cGGCgCCCGCGGCCGCcagcAGCGCGucGCUcuccGCCg -3'
miRNA:   3'- -CUG-GGGCGCCGGCG----UCGUGC--CGA----CGG- -5'
23664 5' -65.1 NC_005261.1 + 109229 0.76 0.098657
Target:  5'- cACgCCGCGcGCUGCAGCGCGGCccagugcgggGCCa -3'
miRNA:   3'- cUGgGGCGC-CGGCGUCGUGCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 3352 0.76 0.100406
Target:  5'- cGCCCgGCgcgccggccuucagGGCCGCgAGCGCGGCcGCCa -3'
miRNA:   3'- cUGGGgCG--------------CCGGCG-UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 81890 0.76 0.101164
Target:  5'- -cCCCUGCGGCCGcCAGCAUGaacGCgGCCa -3'
miRNA:   3'- cuGGGGCGCCGGC-GUCGUGC---CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 99841 0.76 0.101164
Target:  5'- cGCCCCGCcGCCcaGCGGCAcCGGCcGCCg -3'
miRNA:   3'- cUGGGGCGcCGG--CGUCGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 73477 0.76 0.103731
Target:  5'- -cCCCUG-GGCCGCGGCGCGGC-GCg -3'
miRNA:   3'- cuGGGGCgCCGGCGUCGUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 1680 0.76 0.10636
Target:  5'- uGCgCCCGuCGaGCCGCggcAGCACGcGCUGCCg -3'
miRNA:   3'- cUG-GGGC-GC-CGGCG---UCGUGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 4397 0.76 0.10636
Target:  5'- cGGCCggGCGGCgGCGGCGCG-CUGCCg -3'
miRNA:   3'- -CUGGggCGCCGgCGUCGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 84575 0.76 0.111526
Target:  5'- cGGCCCCGUagacGGCCGUcugcgccAGCGCGccguuGCUGCCg -3'
miRNA:   3'- -CUGGGGCG----CCGGCG-------UCGUGC-----CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 92568 0.76 0.111526
Target:  5'- cGCCCCGCGcGCCGCGcgcccacGCGCGaGCgcaGCCg -3'
miRNA:   3'- cUGGGGCGC-CGGCGU-------CGUGC-CGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 109320 0.76 0.111526
Target:  5'- uGGCCUccgcgagCGCGGCCGCGGgGuCGGCgGCCg -3'
miRNA:   3'- -CUGGG-------GCGCCGGCGUCgU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 81444 0.76 0.111805
Target:  5'- cGCCCCGCGGCgggcgccgccaGCAGCAgGGCccacGCCg -3'
miRNA:   3'- cUGGGGCGCCGg----------CGUCGUgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 63002 0.76 0.111805
Target:  5'- cGGCCCUcgGCGGCCGCGcccGCGCGGgC-GCCg -3'
miRNA:   3'- -CUGGGG--CGCCGGCGU---CGUGCC-GaCGG- -5'
23664 5' -65.1 NC_005261.1 + 132049 0.76 0.111805
Target:  5'- gGACCCCggggaggugGCGGCCGaGGuCGCGGCcGCCg -3'
miRNA:   3'- -CUGGGG---------CGCCGGCgUC-GUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 44015 0.76 0.114624
Target:  5'- cGGCUUCggcgcggcggGCGGCCGCcGCGCGGCgGCCg -3'
miRNA:   3'- -CUGGGG----------CGCCGGCGuCGUGCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.