miRNA display CGI


Results 61 - 80 of 704 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 44015 0.76 0.114624
Target:  5'- cGGCUUCggcgcggcggGCGGCCGCcGCGCGGCgGCCg -3'
miRNA:   3'- -CUGGGG----------CGCCGGCGuCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 20323 0.76 0.114624
Target:  5'- gGGCCCCGa-GCCGCGcacgagcgacGCccGCGGCUGCCg -3'
miRNA:   3'- -CUGGGGCgcCGGCGU----------CG--UGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 39335 0.75 0.11751
Target:  5'- cGCCgCCGCGGCCaaGCugcGCGCGGCggcaGCCg -3'
miRNA:   3'- cUGG-GGCGCCGG--CGu--CGUGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 106912 0.75 0.11751
Target:  5'- cGCgCCGCGGCgCGCuGCAgGGCcGCCa -3'
miRNA:   3'- cUGgGGCGCCG-GCGuCGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 91432 0.75 0.11751
Target:  5'- cGCCgCCGCGGUgaacgcgcugCGCGGCACGGCcccGCCc -3'
miRNA:   3'- cUGG-GGCGCCG----------GCGUCGUGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 125736 0.75 0.11751
Target:  5'- gGGCCgCCGCaagggGGCCGgGGcCAgGGCUGCCg -3'
miRNA:   3'- -CUGG-GGCG-----CCGGCgUC-GUgCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 96979 0.75 0.11751
Target:  5'- cGAUUCaCGCGGCCuCGGCGCGGCUaagcgcGCCa -3'
miRNA:   3'- -CUGGG-GCGCCGGcGUCGUGCCGA------CGG- -5'
23664 5' -65.1 NC_005261.1 + 44258 0.75 0.11751
Target:  5'- cGACgCCGCGGCgCGCGGgGgGGCgggGCCc -3'
miRNA:   3'- -CUGgGGCGCCG-GCGUCgUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 3770 0.75 0.11751
Target:  5'- cGCCUCGCggcaGGCCGCAGCGCaGCgguccGCCa -3'
miRNA:   3'- cUGGGGCG----CCGGCGUCGUGcCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 137959 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 14355 0.75 0.120463
Target:  5'- cGGCagcagCCGCGGCCgggGCGGCGCGGUgGCCc -3'
miRNA:   3'- -CUGg----GGCGCCGG---CGUCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 312 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 276 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 132541 0.75 0.120463
Target:  5'- cGCCCuCGCGcGCgagggcgaggCGCAGUACGGCUGCg -3'
miRNA:   3'- cUGGG-GCGC-CG----------GCGUCGUGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 118570 0.75 0.120463
Target:  5'- uGCCCgCGCGcGCgGCGGCGCGcGCcGCCg -3'
miRNA:   3'- cUGGG-GCGC-CGgCGUCGUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 53706 0.75 0.120463
Target:  5'- gGGCgCCGCGcGCCGCGGCcagcuGCGGCgcGCCc -3'
miRNA:   3'- -CUGgGGCGC-CGGCGUCG-----UGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 29862 0.75 0.123485
Target:  5'- cGGCCgCGCGGCgC-CGGCGCcGCUGCCg -3'
miRNA:   3'- -CUGGgGCGCCG-GcGUCGUGcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 31998 0.75 0.123485
Target:  5'- gGugCCCGUGccGCCGCgcgaguaccggcAGCGCGuGCUGCCg -3'
miRNA:   3'- -CugGGGCGC--CGGCG------------UCGUGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 29386 0.75 0.123485
Target:  5'- uGCCCCgagauccgcgagGCGGCCGCGcGCuacGCGGCgGCCg -3'
miRNA:   3'- cUGGGG------------CGCCGGCGU-CG---UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 22781 0.75 0.126578
Target:  5'- gGGCCCCGCGagaaggggguuGUCGCGGCcgGCGGCggcgcUGCCg -3'
miRNA:   3'- -CUGGGGCGC-----------CGGCGUCG--UGCCG-----ACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.