miRNA display CGI


Results 21 - 40 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 77795 0.66 0.493337
Target:  5'- uACCCCGgcgaGGgCGCGcccGC-CGaGCUGCCg -3'
miRNA:   3'- cUGGGGCg---CCgGCGU---CGuGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 47284 0.66 0.493337
Target:  5'- aGCgCCGCGuGCCacugugcgaGCacgAGCAUGGCgGCCa -3'
miRNA:   3'- cUGgGGCGC-CGG---------CG---UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 98288 0.66 0.493337
Target:  5'- cGCCCgGCGcGuCCGCGGCcucgGgGGCgggcGCCg -3'
miRNA:   3'- cUGGGgCGC-C-GGCGUCG----UgCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 21231 0.66 0.493337
Target:  5'- cGGgCCCGuCGGCUgGCGGCuuuucAgGGCgUGCCg -3'
miRNA:   3'- -CUgGGGC-GCCGG-CGUCG-----UgCCG-ACGG- -5'
23664 5' -65.1 NC_005261.1 + 28233 0.66 0.493337
Target:  5'- uACCCCcCGGCgCGCgcgauAGCGgGgGCUGCUc -3'
miRNA:   3'- cUGGGGcGCCG-GCG-----UCGUgC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 61459 0.66 0.492426
Target:  5'- gGACCCCGUGGa-GUAccuuuucGCGCaGCUGCa -3'
miRNA:   3'- -CUGGGGCGCCggCGU-------CGUGcCGACGg -5'
23664 5' -65.1 NC_005261.1 + 133767 0.66 0.492426
Target:  5'- cGCCCCGUGccuccacGCCcucguGCGGCGCaucccgcccgGGCUGCUc -3'
miRNA:   3'- cUGGGGCGC-------CGG-----CGUCGUG----------CCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 44744 0.66 0.490606
Target:  5'- gGGCCCCGa-GCUGCGcGCgacccgggagcggaGCGGgaGCCg -3'
miRNA:   3'- -CUGGGGCgcCGGCGU-CG--------------UGCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 120573 0.66 0.487882
Target:  5'- aGCCCCGUcaucgucagcgucguGGCCGUcGCcuGCGGCcucggcGCCg -3'
miRNA:   3'- cUGGGGCG---------------CCGGCGuCG--UGCCGa-----CGG- -5'
23664 5' -65.1 NC_005261.1 + 15761 0.66 0.485165
Target:  5'- cGCCUCGCcgcgauacacaaGGCCGCuggcgggcgccgcccGCGCGGCcagcGCCg -3'
miRNA:   3'- cUGGGGCG------------CCGGCGu--------------CGUGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 104034 0.66 0.484261
Target:  5'- cGCgCCGCGcaggaaguacuGCCGCAGCGCcucGGCcGCg -3'
miRNA:   3'- cUGgGGCGC-----------CGGCGUCGUG---CCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 103564 0.66 0.484261
Target:  5'- gGGCCCCGUGccGCCGCcGCcCGcGCcGUCg -3'
miRNA:   3'- -CUGGGGCGC--CGGCGuCGuGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 62215 0.66 0.484261
Target:  5'- gGugCgCGCGGCCGCGucuGCGCccucgcgguGCUGCa -3'
miRNA:   3'- -CugGgGCGCCGGCGU---CGUGc--------CGACGg -5'
23664 5' -65.1 NC_005261.1 + 93798 0.66 0.484261
Target:  5'- gGACgCCGC-GCCGCcGCGC-GCcGCCg -3'
miRNA:   3'- -CUGgGGCGcCGGCGuCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 21133 0.66 0.484261
Target:  5'- aGCCCCcacgaGCGcGUgGUgauuAGCACGGCccUGCCg -3'
miRNA:   3'- cUGGGG-----CGC-CGgCG----UCGUGCCG--ACGG- -5'
23664 5' -65.1 NC_005261.1 + 132345 0.66 0.484261
Target:  5'- gGGCCauGCGcagcuuccGCCGCGGCGCG-CUcGCCg -3'
miRNA:   3'- -CUGGggCGC--------CGGCGUCGUGCcGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 96940 0.66 0.484261
Target:  5'- aGACgCCCaCGGgCGCaucGGCGgGGCaGCCg -3'
miRNA:   3'- -CUG-GGGcGCCgGCG---UCGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 123348 0.66 0.484261
Target:  5'- --gCUCGCGGCCGacCAGCGCcucuauGCUGUCc -3'
miRNA:   3'- cugGGGCGCCGGC--GUCGUGc-----CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 118291 0.66 0.484261
Target:  5'- cGGCCgCCGCGGgcaCCGgGGCGCacuuccgcaccGcGCUGCUg -3'
miRNA:   3'- -CUGG-GGCGCC---GGCgUCGUG-----------C-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 2120 0.66 0.484261
Target:  5'- cGCCCUGCGcGCCG-AGCGCgcucacguccGGCgcGCCc -3'
miRNA:   3'- cUGGGGCGC-CGGCgUCGUG----------CCGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.