miRNA display CGI


Results 41 - 60 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 62215 0.66 0.484261
Target:  5'- gGugCgCGCGGCCGCGucuGCGCccucgcgguGCUGCa -3'
miRNA:   3'- -CugGgGCGCCGGCGU---CGUGc--------CGACGg -5'
23664 5' -65.1 NC_005261.1 + 103564 0.66 0.484261
Target:  5'- gGGCCCCGUGccGCCGCcGCcCGcGCcGUCg -3'
miRNA:   3'- -CUGGGGCGC--CGGCGuCGuGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 85714 0.66 0.484261
Target:  5'- --gCCCGCagaagauGCCGUGGCACuGGCUgagcGCCa -3'
miRNA:   3'- cugGGGCGc------CGGCGUCGUG-CCGA----CGG- -5'
23664 5' -65.1 NC_005261.1 + 46907 0.66 0.484261
Target:  5'- --gCCCGC-GCaCGCAcGCGgGGCUGUCc -3'
miRNA:   3'- cugGGGCGcCG-GCGU-CGUgCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 2120 0.66 0.484261
Target:  5'- cGCCCUGCGcGCCG-AGCGCgcucacguccGGCgcGCCc -3'
miRNA:   3'- cUGGGGCGC-CGGCgUCGUG----------CCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 82282 0.66 0.484261
Target:  5'- cGCUggUCGCGGauGCAGCGCccgaGGCUGUCc -3'
miRNA:   3'- cUGG--GGCGCCggCGUCGUG----CCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 123575 0.66 0.483357
Target:  5'- cGGCCCCcguacaccgcugcGcCGGCUacgcaguucaGCAGCAgguucaGGCUGCCc -3'
miRNA:   3'- -CUGGGG-------------C-GCCGG----------CGUCGUg-----CCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 45531 0.66 0.475265
Target:  5'- cGGCUCgUGCuGCCGCAcuacgcuguuGCcCGGCUGCUg -3'
miRNA:   3'- -CUGGG-GCGcCGGCGU----------CGuGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 59152 0.66 0.475265
Target:  5'- cGCCCCG-GGCgCGCGGCGCccGCcccaGCCc -3'
miRNA:   3'- cUGGGGCgCCG-GCGUCGUGc-CGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 31593 0.66 0.475265
Target:  5'- uGAgCgCGCucGGCgCGCAGgGCGuGCUGCUg -3'
miRNA:   3'- -CUgGgGCG--CCG-GCGUCgUGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 135318 0.66 0.475265
Target:  5'- cGCCCUggGCGGCCGUgcuggacuuuGGCccggaGCGGUUcGCCc -3'
miRNA:   3'- cUGGGG--CGCCGGCG----------UCG-----UGCCGA-CGG- -5'
23664 5' -65.1 NC_005261.1 + 23989 0.66 0.475265
Target:  5'- gGGCUagUCGCGGCgG-AGCGCuGCUGCUa -3'
miRNA:   3'- -CUGG--GGCGCCGgCgUCGUGcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 101584 0.66 0.475265
Target:  5'- cGCgCCGUGGCCuCcGCGCGcGCcGCCu -3'
miRNA:   3'- cUGgGGCGCCGGcGuCGUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 51675 0.66 0.475265
Target:  5'- ---gCCGCGaGCUGCAuCGCGGUcGCCg -3'
miRNA:   3'- cuggGGCGC-CGGCGUcGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 71319 0.66 0.475265
Target:  5'- -cCUCCGCGaGCaCGUAGC-CGGCcGCg -3'
miRNA:   3'- cuGGGGCGC-CG-GCGUCGuGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 69498 0.66 0.475265
Target:  5'- uGCaCCUGUacGCCgGCGGCG-GGCUGCCg -3'
miRNA:   3'- cUG-GGGCGc-CGG-CGUCGUgCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 78204 0.66 0.475265
Target:  5'- gGACgCCaGC-GCCGUGGCugGcCUGCCg -3'
miRNA:   3'- -CUGgGG-CGcCGGCGUCGugCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 83345 0.66 0.47437
Target:  5'- cGCCaCCGUGGCCcgcaggaagGCguccacgucggcgAGCGCGGCgagcgcgGCCu -3'
miRNA:   3'- cUGG-GGCGCCGG---------CG-------------UCGUGCCGa------CGG- -5'
23664 5' -65.1 NC_005261.1 + 29181 0.66 0.47437
Target:  5'- gGGCCCgGCGcccucGCCGCGGCGCccgcgcgGGC-GCg -3'
miRNA:   3'- -CUGGGgCGC-----CGGCGUCGUG-------CCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 119770 0.66 0.47437
Target:  5'- cGGCCCagaacggcucgguCGCGuaCCGCAGCGCGGa-GCUg -3'
miRNA:   3'- -CUGGG-------------GCGCc-GGCGUCGUGCCgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.