miRNA display CGI


Results 61 - 80 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 16729 0.66 0.466353
Target:  5'- uGGCCCUcgGCGaGCCGC-GCG-GGCgccGCCa -3'
miRNA:   3'- -CUGGGG--CGC-CGGCGuCGUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 117362 0.66 0.466353
Target:  5'- --gCCCGCaaGGCCGCccuccuggaGGCGC-GCUGCUu -3'
miRNA:   3'- cugGGGCG--CCGGCG---------UCGUGcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 106750 0.66 0.466353
Target:  5'- cGCCuCCGCGcCCGCcacgAGCuugcCGGCgGCCa -3'
miRNA:   3'- cUGG-GGCGCcGGCG----UCGu---GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 113189 0.66 0.466353
Target:  5'- uGGCCaCCaGCGccacGCUGUgcgAGUACGGCUGCg -3'
miRNA:   3'- -CUGG-GG-CGC----CGGCG---UCGUGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 127489 0.66 0.466353
Target:  5'- aGACgCUgGCGGCUGCcugccgGGCGuacuCGGCgGCCa -3'
miRNA:   3'- -CUG-GGgCGCCGGCG------UCGU----GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 34733 0.66 0.466353
Target:  5'- cGCCCCcugGCGGCCGCGGggUGG-UGUUu -3'
miRNA:   3'- cUGGGG---CGCCGGCGUCguGCCgACGG- -5'
23664 5' -65.1 NC_005261.1 + 47700 0.66 0.466353
Target:  5'- cGGCgCCGCGuCgGCGGCGuCGGggGCCu -3'
miRNA:   3'- -CUGgGGCGCcGgCGUCGU-GCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 75313 0.66 0.466353
Target:  5'- cGCCaCCGuCGGCgGC-GCGCGGa-GCCc -3'
miRNA:   3'- cUGG-GGC-GCCGgCGuCGUGCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 101851 0.66 0.466353
Target:  5'- cGCgCCCGcCGGCCGCcugcAGCACguccgcgcgcagGGCgcccaGCCg -3'
miRNA:   3'- cUG-GGGC-GCCGGCG----UCGUG------------CCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 103049 0.66 0.466353
Target:  5'- gGGCCCaGCGcCUGUcccGGCACGGC-GCCc -3'
miRNA:   3'- -CUGGGgCGCcGGCG---UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 125704 0.66 0.466353
Target:  5'- uGGCCCgGCgacGGCCGCcgcgGGCuCGGCUGn- -3'
miRNA:   3'- -CUGGGgCG---CCGGCG----UCGuGCCGACgg -5'
23664 5' -65.1 NC_005261.1 + 38591 0.66 0.466353
Target:  5'- -uCCCUGCuGGCgGCc-CGCGGCUGgCg -3'
miRNA:   3'- cuGGGGCG-CCGgCGucGUGCCGACgG- -5'
23664 5' -65.1 NC_005261.1 + 63832 0.66 0.466353
Target:  5'- uGCCUCGUGGCgCGCcaccuGCA--GCUGCCc -3'
miRNA:   3'- cUGGGGCGCCG-GCGu----CGUgcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 32433 0.66 0.466353
Target:  5'- aGCCCCGcCGGCCugGGCGcCGGCacaGUCa -3'
miRNA:   3'- cUGGGGC-GCCGGcgUCGU-GCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 84372 0.66 0.466353
Target:  5'- --gCCCGCGGgCuCGGCcuCGGCcGCCg -3'
miRNA:   3'- cugGGGCGCCgGcGUCGu-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 104700 0.66 0.465467
Target:  5'- cGCCCCGaagagcggcuggaCGGCCGagGGCGCGuCgUGCCg -3'
miRNA:   3'- cUGGGGC-------------GCCGGCg-UCGUGCcG-ACGG- -5'
23664 5' -65.1 NC_005261.1 + 64742 0.66 0.465467
Target:  5'- cGGCCCCGacguugcggaaguUGGCCuCGGCcagcucGCGGCgcGCCa -3'
miRNA:   3'- -CUGGGGC-------------GCCGGcGUCG------UGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 27282 0.66 0.465467
Target:  5'- cGGCCCC-CGGaCCGCccucgcgAGCA-GGCcggGCCa -3'
miRNA:   3'- -CUGGGGcGCC-GGCG-------UCGUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 81978 0.66 0.465467
Target:  5'- -gUUCgGCGGCUGCGcgaaguuGUGCGcGCUGCCg -3'
miRNA:   3'- cuGGGgCGCCGGCGU-------CGUGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 30706 0.66 0.457529
Target:  5'- aGGCCCgCGgGaGCCcCGGCGCcgGGCcGCCa -3'
miRNA:   3'- -CUGGG-GCgC-CGGcGUCGUG--CCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.