miRNA display CGI


Results 81 - 100 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 127331 0.66 0.457529
Target:  5'- --gCCCGCgggGGCCggaGCGGCGgGGCgcuggGCCc -3'
miRNA:   3'- cugGGGCG---CCGG---CGUCGUgCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 2030 0.66 0.457529
Target:  5'- cGAUCagCCGCcGCCGCGcCGCGGCcaGCCg -3'
miRNA:   3'- -CUGG--GGCGcCGGCGUcGUGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 107508 0.66 0.457529
Target:  5'- cGCCaCGCaGGCCGCGccgaagggcagcGCGuCGGCgGCCa -3'
miRNA:   3'- cUGGgGCG-CCGGCGU------------CGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 116063 0.66 0.457529
Target:  5'- cGCCCCGCGuGgCGC-GC-CGGUccccguggaUGCCg -3'
miRNA:   3'- cUGGGGCGC-CgGCGuCGuGCCG---------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 34018 0.66 0.457529
Target:  5'- uGCCUCGacgugaucacCGG-CGCGGCGCGcgcGCUGCCc -3'
miRNA:   3'- cUGGGGC----------GCCgGCGUCGUGC---CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 100853 0.66 0.457529
Target:  5'- cGACCUgCGCgucgaaGGCCGCcagaAGCGCGcGCaGCCc -3'
miRNA:   3'- -CUGGG-GCG------CCGGCG----UCGUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 75955 0.66 0.457529
Target:  5'- uGCCCCGagguggaGGUcaCGCAGCucuucccgggcGCGGCcGCCc -3'
miRNA:   3'- cUGGGGCg------CCG--GCGUCG-----------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 54082 0.66 0.457529
Target:  5'- aGGCCgCGCGGaCCGCcacguuGCcgAUGGCcGCCc -3'
miRNA:   3'- -CUGGgGCGCC-GGCGu-----CG--UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3832 0.66 0.457529
Target:  5'- cGGgCCCGgGcGCUgGCGGCAgCGGC-GCCg -3'
miRNA:   3'- -CUgGGGCgC-CGG-CGUCGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12954 0.66 0.457529
Target:  5'- uGGCCCgCGCGGCgCGC-GCACcccagacaGCgaggGCCg -3'
miRNA:   3'- -CUGGG-GCGCCG-GCGuCGUGc-------CGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 16295 0.66 0.457529
Target:  5'- gGGCgCCGUcgGGCC-CAGCGgCGGCcggGCCc -3'
miRNA:   3'- -CUGgGGCG--CCGGcGUCGU-GCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 106264 0.66 0.457529
Target:  5'- cGCCgCCGCuGCCGCcGgGCGGCccgUGCa -3'
miRNA:   3'- cUGG-GGCGcCGGCGuCgUGCCG---ACGg -5'
23664 5' -65.1 NC_005261.1 + 78774 0.66 0.457529
Target:  5'- uGCCCCGCccccucccccGCCGCAGgggcucccucuCACGGCUcCCc -3'
miRNA:   3'- cUGGGGCGc---------CGGCGUC-----------GUGCCGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 13116 0.66 0.457529
Target:  5'- gGGCgUCgGCGGCCGCGGgGCGcGUgugGUCg -3'
miRNA:   3'- -CUG-GGgCGCCGGCGUCgUGC-CGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 50414 0.66 0.456651
Target:  5'- aGCCCCGCGucgcggaGCCGCucgugcagcguGCGCGugaaGCUGCg -3'
miRNA:   3'- cUGGGGCGC-------CGGCGu----------CGUGC----CGACGg -5'
23664 5' -65.1 NC_005261.1 + 30963 0.66 0.456651
Target:  5'- aGGCCcgCCGCGacggcccGCCGCGGCGCaagcgcaagucGGCcgggGCCa -3'
miRNA:   3'- -CUGG--GGCGC-------CGGCGUCGUG-----------CCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 67632 0.66 0.452277
Target:  5'- aGACCacguacgccgagaaCGCgGGCCGCccguccgcGCGCGGC-GCCa -3'
miRNA:   3'- -CUGGg-------------GCG-CCGGCGu-------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 6259 0.66 0.452277
Target:  5'- cGCCCCGCGgggcggcccGCCGcCAaacucauuguaauauGCGCGGCcGUCg -3'
miRNA:   3'- cUGGGGCGC---------CGGC-GU---------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 106166 0.66 0.452277
Target:  5'- cGCUCCGCGcuaauacuagggggcGCCGCGcGCGUGGC-GCCg -3'
miRNA:   3'- cUGGGGCGC---------------CGGCGU-CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 116270 0.66 0.452277
Target:  5'- cGCCCgGCGGCguCGUgauGGCGucgugcuucaccagcCGGUUGCCg -3'
miRNA:   3'- cUGGGgCGCCG--GCG---UCGU---------------GCCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.