miRNA display CGI


Results 1 - 20 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 107 0.69 0.295921
Target:  5'- gGGCCCCGCcGcCCGC-GC-CGGC-GCCg -3'
miRNA:   3'- -CUGGGGCGcC-GGCGuCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 191 0.68 0.359315
Target:  5'- uGCuCCCGgGGCCaGCGGUGCcGCcGCCg -3'
miRNA:   3'- cUG-GGGCgCCGG-CGUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 234 0.82 0.038267
Target:  5'- gGGCCCCGCgagcgggcccGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGGGGCG----------CCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 276 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 312 0.75 0.120463
Target:  5'- cGGCUgcggCgGCGGCUGCGGCgGCGGCUGCg -3'
miRNA:   3'- -CUGG----GgCGCCGGCGUCG-UGCCGACGg -5'
23664 5' -65.1 NC_005261.1 + 362 0.71 0.220214
Target:  5'- cGGCCCgGCGGCgGUGGCGgCGGUgGCg -3'
miRNA:   3'- -CUGGGgCGCCGgCGUCGU-GCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 1179 0.72 0.186718
Target:  5'- cGCgCCGCGGCCGgGGC-CGGg-GCCg -3'
miRNA:   3'- cUGgGGCGCCGGCgUCGuGCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 1299 0.7 0.288799
Target:  5'- gGGCuCCCGUcgccGGCgGCGGCACGcGCUccgggacGCCg -3'
miRNA:   3'- -CUG-GGGCG----CCGgCGUCGUGC-CGA-------CGG- -5'
23664 5' -65.1 NC_005261.1 + 1399 0.82 0.042448
Target:  5'- gGGCgCCGCGGCCGCGGCGgCGGCggggGCg -3'
miRNA:   3'- -CUGgGGCGCCGGCGUCGU-GCCGa---CGg -5'
23664 5' -65.1 NC_005261.1 + 1456 0.7 0.26463
Target:  5'- cGCCUCggcguGCGGCUccaGCAGCGCGGCcGCg -3'
miRNA:   3'- cUGGGG-----CGCCGG---CGUCGUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 1498 0.72 0.186718
Target:  5'- cACCgCCGCGGCCgGCAGCucguCGGgC-GCCa -3'
miRNA:   3'- cUGG-GGCGCCGG-CGUCGu---GCC-GaCGG- -5'
23664 5' -65.1 NC_005261.1 + 1583 0.75 0.132978
Target:  5'- aGCCCCcaGCGGuuGgCGGCGCGGUggcugGCCg -3'
miRNA:   3'- cUGGGG--CGCCggC-GUCGUGCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 1646 0.67 0.390385
Target:  5'- aGCCCCaGC-GCCGCGcucuGCGCGGCcaUGUCc -3'
miRNA:   3'- cUGGGG-CGcCGGCGU----CGUGCCG--ACGG- -5'
23664 5' -65.1 NC_005261.1 + 1680 0.76 0.10636
Target:  5'- uGCgCCCGuCGaGCCGCggcAGCACGcGCUGCCg -3'
miRNA:   3'- cUG-GGGC-GC-CGGCG---UCGUGC-CGACGG- -5'
23664 5' -65.1 NC_005261.1 + 1782 0.74 0.154007
Target:  5'- uGGCgCCGCGGCagagcCGCAGCGgCGGC-GCCc -3'
miRNA:   3'- -CUGgGGCGCCG-----GCGUCGU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 1861 0.68 0.344441
Target:  5'- gGGCCCgaagaCGC-GCCGCgaggccAGCACGGCgcgcGCCa -3'
miRNA:   3'- -CUGGG-----GCGcCGGCG------UCGUGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 1942 0.67 0.398423
Target:  5'- gGGCagcaCCGCGGCgCGCAGguaCACGuGC-GCCu -3'
miRNA:   3'- -CUGg---GGCGCCG-GCGUC---GUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 1977 0.67 0.398423
Target:  5'- --gCCCGaCGGCCG-GGCcauCGGCgGCCa -3'
miRNA:   3'- cugGGGC-GCCGGCgUCGu--GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 2030 0.66 0.457529
Target:  5'- cGAUCagCCGCcGCCGCGcCGCGGCcaGCCg -3'
miRNA:   3'- -CUGG--GGCGcCGGCGUcGUGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 2120 0.66 0.484261
Target:  5'- cGCCCUGCGcGCCG-AGCGCgcucacguccGGCgcGCCc -3'
miRNA:   3'- cUGGGGCGC-CGGCgUCGUG----------CCGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.