miRNA display CGI


Results 21 - 40 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 2163 0.68 0.385614
Target:  5'- gGACCCgGCccaggcgugcgagucGGCgcucaGCAGCAgcCGGUUGCCc -3'
miRNA:   3'- -CUGGGgCG---------------CCGg----CGUCGU--GCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 2369 0.7 0.28944
Target:  5'- aGGCCaCGCGccGCCGCAGCGgCGcGCUGgCg -3'
miRNA:   3'- -CUGGgGCGC--CGGCGUCGU-GC-CGACgG- -5'
23664 5' -65.1 NC_005261.1 + 2406 0.7 0.252886
Target:  5'- cGCgCCCGCgGGCC-CcGCGCGGCggcggGCCg -3'
miRNA:   3'- cUG-GGGCG-CCGGcGuCGUGCCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 2522 0.75 0.132978
Target:  5'- cGACCUCGgGGCgGCAGUA-GGCcGCCa -3'
miRNA:   3'- -CUGGGGCgCCGgCGUCGUgCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 2581 0.72 0.203825
Target:  5'- -uCCCCggGCGGCaCGCGGCggaagccgccgucgGCGGCgggGCCg -3'
miRNA:   3'- cuGGGG--CGCCG-GCGUCG--------------UGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 2638 0.68 0.337172
Target:  5'- gGGCCCagcaCGCGGgCggGCAGCgGCGGCUcccGCCg -3'
miRNA:   3'- -CUGGG----GCGCCgG--CGUCG-UGCCGA---CGG- -5'
23664 5' -65.1 NC_005261.1 + 2682 0.72 0.20527
Target:  5'- gGACCCgGCGGCgCGCcggcuuuuGGC-CGGC-GCCg -3'
miRNA:   3'- -CUGGGgCGCCG-GCG--------UCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 2723 0.7 0.276194
Target:  5'- uGGCCCCGgccgacuugcgcuUGcGCCGCGGCgggccgucGCGGCggGCCu -3'
miRNA:   3'- -CUGGGGC-------------GC-CGGCGUCG--------UGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 2783 0.7 0.28944
Target:  5'- -cCCCCGaggGGCUGCcGC-CGGCgGCCg -3'
miRNA:   3'- cuGGGGCg--CCGGCGuCGuGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 2822 0.67 0.423159
Target:  5'- cGGCCCCaGCccgagcucgGGCgGCAGgGcCGGCgGCCc -3'
miRNA:   3'- -CUGGGG-CG---------CCGgCGUCgU-GCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 2940 0.67 0.431607
Target:  5'- cACCgCCGCGGCCGggcucCGGCcCGGacuaggGCCc -3'
miRNA:   3'- cUGG-GGCGCCGGC-----GUCGuGCCga----CGG- -5'
23664 5' -65.1 NC_005261.1 + 2994 0.71 0.247176
Target:  5'- cGGCCUgGCGGCC-CGGCGCcggGGCUcCCg -3'
miRNA:   3'- -CUGGGgCGCCGGcGUCGUG---CCGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 3150 0.7 0.28944
Target:  5'- -uCCCCGUccgaGGCCcCGGCgGCGGCgGCCu -3'
miRNA:   3'- cuGGGGCG----CCGGcGUCG-UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3352 0.76 0.100406
Target:  5'- cGCCCgGCgcgccggccuucagGGCCGCgAGCGCGGCcGCCa -3'
miRNA:   3'- cUGGGgCG--------------CCGGCG-UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3509 0.81 0.049568
Target:  5'- cGCCagCGCGGCCGCcuccAGCGCGGCgGCCg -3'
miRNA:   3'- cUGGg-GCGCCGGCG----UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 3539 0.69 0.316039
Target:  5'- cGCCU--CGGCgCGCAGCGCGGCggGCg -3'
miRNA:   3'- cUGGGgcGCCG-GCGUCGUGCCGa-CGg -5'
23664 5' -65.1 NC_005261.1 + 3666 0.68 0.344441
Target:  5'- ----gCGCaGGCCGCGGC-CGGCagGCCg -3'
miRNA:   3'- cugggGCG-CCGGCGUCGuGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 3770 0.75 0.11751
Target:  5'- cGCCUCGCggcaGGCCGCAGCGCaGCgguccGCCa -3'
miRNA:   3'- cUGGGGCG----CCGGCGUCGUGcCGa----CGG- -5'
23664 5' -65.1 NC_005261.1 + 3804 0.69 0.322971
Target:  5'- aGCUCgCGCaGCCGCucGCGCG-CUGCCg -3'
miRNA:   3'- cUGGG-GCGcCGGCGu-CGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 3832 0.66 0.457529
Target:  5'- cGGgCCCGgGcGCUgGCGGCAgCGGC-GCCg -3'
miRNA:   3'- -CUgGGGCgC-CGG-CGUCGU-GCCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.