miRNA display CGI


Results 41 - 60 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 3863 0.74 0.139677
Target:  5'- cGCCgCGCGGCCgGCgAGCACGGC-GCg -3'
miRNA:   3'- cUGGgGCGCCGG-CG-UCGUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 3910 0.66 0.448794
Target:  5'- gGGCgCCCGC-GCCGcCGGCGcCGGCcuccggguagGCCa -3'
miRNA:   3'- -CUG-GGGCGcCGGC-GUCGU-GCCGa---------CGG- -5'
23664 5' -65.1 NC_005261.1 + 4017 0.67 0.423159
Target:  5'- uGGCCaCGCaGGCCGCcacGUGCGGCagcGCCc -3'
miRNA:   3'- -CUGGgGCG-CCGGCGu--CGUGCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 4137 0.67 0.398423
Target:  5'- aGCCCUGCacgcgccGCUGCAGCA-GGCgcGCCa -3'
miRNA:   3'- cUGGGGCGc------CGGCGUCGUgCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 4300 0.88 0.014937
Target:  5'- gGGCCCCGCGGCCGCcgcguagcGCGCGGCcGCCu -3'
miRNA:   3'- -CUGGGGCGCCGGCGu-------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4397 0.76 0.10636
Target:  5'- cGGCCggGCGGCgGCGGCGCG-CUGCCg -3'
miRNA:   3'- -CUGGggCGCCGgCGUCGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 4454 0.73 0.165218
Target:  5'- gGGCCCUccaGCGGCgGCGGCccgucgcGCGGC-GCCg -3'
miRNA:   3'- -CUGGGG---CGCCGgCGUCG-------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4520 0.72 0.215133
Target:  5'- cGCCCgCGCGggcGCCGCGGCGagGGC-GCCg -3'
miRNA:   3'- cUGGG-GCGC---CGGCGUCGUg-CCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4655 0.72 0.215133
Target:  5'- aAUCCaguGuCGGCCGCGGCgGCGGCgGCCc -3'
miRNA:   3'- cUGGGg--C-GCCGGCGUCG-UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4843 0.72 0.190759
Target:  5'- cGGCgUCCGC-GCCGCAGCcucaaggGCGGCgGCCa -3'
miRNA:   3'- -CUG-GGGCGcCGGCGUCG-------UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4881 0.8 0.056234
Target:  5'- cGGCCgccucagCCGCGGCCGCcucggcuucGGCgGCGGCUGCCu -3'
miRNA:   3'- -CUGG-------GGCGCCGGCG---------UCG-UGCCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 4925 0.71 0.241573
Target:  5'- -uCCgCCGCGGCCGCgAGCGCccGC-GCCg -3'
miRNA:   3'- cuGG-GGCGCCGGCG-UCGUGc-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 4962 0.7 0.252886
Target:  5'- cGCCCC-CGGCCGCGGCGuccucUGGg-GCCc -3'
miRNA:   3'- cUGGGGcGCCGGCGUCGU-----GCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 5087 0.68 0.366153
Target:  5'- -cCCCCGCGGCCaccaugcgccacaGCuccgccagcucGGCGCGgGCgGCCc -3'
miRNA:   3'- cuGGGGCGCCGG-------------CG-----------UCGUGC-CGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 5156 0.7 0.283071
Target:  5'- cGGCCCgGCgGGCCGCgucgAGCAgGGCcggGUCc -3'
miRNA:   3'- -CUGGGgCG-CCGGCG----UCGUgCCGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 5431 0.78 0.0747
Target:  5'- aGACgaCCGCGGCCGCGGCGgCGGCaacagcGCCc -3'
miRNA:   3'- -CUGg-GGCGCCGGCGUCGU-GCCGa-----CGG- -5'
23664 5' -65.1 NC_005261.1 + 5504 0.71 0.247176
Target:  5'- ---gCUGgGGCCGCGGCAgCGGCggcgagGCCg -3'
miRNA:   3'- cuggGGCgCCGGCGUCGU-GCCGa-----CGG- -5'
23664 5' -65.1 NC_005261.1 + 6066 0.66 0.493337
Target:  5'- gGGCCCCucgucccgacgGCGGCgGCaAGCaACGGUgGCg -3'
miRNA:   3'- -CUGGGG-----------CGCCGgCG-UCG-UGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 6259 0.66 0.452277
Target:  5'- cGCCCCGCGgggcggcccGCCGcCAaacucauuguaauauGCGCGGCcGUCg -3'
miRNA:   3'- cUGGGGCGC---------CGGC-GU---------------CGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 8788 0.7 0.285605
Target:  5'- uGCCCCucgGCGGCUGCAGCcgccgagggcuugaaGgGGCgcccGCCg -3'
miRNA:   3'- cUGGGG---CGCCGGCGUCG---------------UgCCGa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.