miRNA display CGI


Results 61 - 80 of 704 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23664 5' -65.1 NC_005261.1 + 9366 0.67 0.414811
Target:  5'- cGAuCCCCGgGaGCCGCauugcgaggugAGCuCGGCUggGCCu -3'
miRNA:   3'- -CU-GGGGCgC-CGGCG-----------UCGuGCCGA--CGG- -5'
23664 5' -65.1 NC_005261.1 + 9979 0.68 0.382455
Target:  5'- -cCCCCGgaCGcGCCuCGGCGCGGCcacccgcuUGCCa -3'
miRNA:   3'- cuGGGGC--GC-CGGcGUCGUGCCG--------ACGG- -5'
23664 5' -65.1 NC_005261.1 + 10092 0.69 0.302515
Target:  5'- cGAcCCCCGcCGcGCCccgGCAGCGgCGGCgacaGCCa -3'
miRNA:   3'- -CU-GGGGC-GC-CGG---CGUCGU-GCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 10524 0.8 0.050471
Target:  5'- gGGCCCCGCGGCgCGCucgcugucgcccccGGCGCGcCUGCCg -3'
miRNA:   3'- -CUGGGGCGCCG-GCG--------------UCGUGCcGACGG- -5'
23664 5' -65.1 NC_005261.1 + 10887 0.69 0.315352
Target:  5'- cGAgCCCggcgccaacggcgGCGGCgGCAGCGCcGCcGCCg -3'
miRNA:   3'- -CUgGGG-------------CGCCGgCGUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 11839 0.73 0.165218
Target:  5'- gGGCCCCGCGGgCGCgcguucgcgAGCGCGagcgucaGCUGCg -3'
miRNA:   3'- -CUGGGGCGCCgGCG---------UCGUGC-------CGACGg -5'
23664 5' -65.1 NC_005261.1 + 11913 0.74 0.14314
Target:  5'- gGGCCCgGCccGGCCgGCGGCuGCGGCgGCCc -3'
miRNA:   3'- -CUGGGgCG--CCGG-CGUCG-UGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 11944 0.66 0.440153
Target:  5'- cGCgCCGCGGCgGCucgcccGGCGCGcGCU-CCa -3'
miRNA:   3'- cUGgGGCGCCGgCG------UCGUGC-CGAcGG- -5'
23664 5' -65.1 NC_005261.1 + 12086 0.69 0.302515
Target:  5'- cGCgCCGgGGCgGCucaaaGGCGCGGC-GCCa -3'
miRNA:   3'- cUGgGGCgCCGgCG-----UCGUGCCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12132 0.69 0.302515
Target:  5'- uGGCgCCCGCcGCCGCGGCGgcCGcGCagGCCc -3'
miRNA:   3'- -CUG-GGGCGcCGGCGUCGU--GC-CGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 12167 0.66 0.493337
Target:  5'- aGCCCCGCacaGGCC--AGCGCcGCcGCCa -3'
miRNA:   3'- cUGGGGCG---CCGGcgUCGUGcCGaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12203 0.66 0.440153
Target:  5'- cGCCgCCGCcgguGCCGCcGcCGCuGCUGCCg -3'
miRNA:   3'- cUGG-GGCGc---CGGCGuC-GUGcCGACGG- -5'
23664 5' -65.1 NC_005261.1 + 12339 0.71 0.241573
Target:  5'- uGGCCggCGCGGCCGCcGcCGCGGCgGCa -3'
miRNA:   3'- -CUGGg-GCGCCGGCGuC-GUGCCGaCGg -5'
23664 5' -65.1 NC_005261.1 + 12526 0.69 0.309221
Target:  5'- gGGCCCCGC-GCCGCcGCcgaauuuauacGCGGggGCCc -3'
miRNA:   3'- -CUGGGGCGcCGGCGuCG-----------UGCCgaCGG- -5'
23664 5' -65.1 NC_005261.1 + 12954 0.66 0.457529
Target:  5'- uGGCCCgCGCGGCgCGC-GCACcccagacaGCgaggGCCg -3'
miRNA:   3'- -CUGGG-GCGCCG-GCGuCGUGc-------CGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 13044 0.66 0.493337
Target:  5'- aGGgCgCGgGGCCGC-GCGCGcccCUGCCg -3'
miRNA:   3'- -CUgGgGCgCCGGCGuCGUGCc--GACGG- -5'
23664 5' -65.1 NC_005261.1 + 13116 0.66 0.457529
Target:  5'- gGGCgUCgGCGGCCGCGGgGCGcGUgugGUCg -3'
miRNA:   3'- -CUG-GGgCGCCGGCGUCgUGC-CGa--CGG- -5'
23664 5' -65.1 NC_005261.1 + 13238 0.72 0.210152
Target:  5'- aGCCCCGaGGCCGaGGC-CGGCgcGCCg -3'
miRNA:   3'- cUGGGGCgCCGGCgUCGuGCCGa-CGG- -5'
23664 5' -65.1 NC_005261.1 + 13337 0.68 0.374632
Target:  5'- cACUCgCGCGGCCaGCGGU-CGGCggagGCUg -3'
miRNA:   3'- cUGGG-GCGCCGG-CGUCGuGCCGa---CGG- -5'
23664 5' -65.1 NC_005261.1 + 13608 0.7 0.258703
Target:  5'- cGCCCgggguguacaCGUGGgaGCGGUACGGCUGCa -3'
miRNA:   3'- cUGGG----------GCGCCggCGUCGUGCCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.